G109405


Basic Information

Item Value
gene id G109405
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3699108 ~ 3714779 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU136971
CTCTCCTGCTCCAGAGGCAGCAGAGACAGCCGGAGAGCAGGAGGcagcctgcagacacacagcccagcaGCGCCCAGCTCAGCACACAGGGggcagggggagagggagaggaagagagagaggaggagggagagggagatggagagagagaggaggaggaggaagaattGAAGAGAGAGGCTGTTGGTGAGGATGAATGTATAGTG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04640 Hematopoietic cell lineage
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU136971 True 206 lncRNA 0.60 2 3699108 3714779

Neighbor

gene id symbol gene type direction distance location
AMCG00006386 NA coding upstream 30177 3653239 ~ 3668931 (+)
AMCG00006384 NA coding upstream 66987 3623947 ~ 3632121 (+)
AMCG00006383 NA coding upstream 102255 3585455 ~ 3596853 (+)
AMCG00006378 NA coding upstream 146754 3541718 ~ 3552354 (+)
AMCG00006374 NA coding upstream 270547 3426425 ~ 3428561 (+)
AMCG00006389 NA coding downstream 34224 3749003 ~ 3763628 (+)
AMCG00006392 NA coding downstream 99834 3814613 ~ 3819824 (+)
AMCG00006396 NA coding downstream 108792 3823571 ~ 3824069 (+)
AMCG00006394 NA coding downstream 110789 3825568 ~ 3826749 (+)
AMCG00006395 ddx39b,uap56,LOC105012335,LOC104931065,LOC103042292 coding downstream 117482 3832261 ~ 3839998 (+)
G109389 NA non-coding upstream 150120 3548614 ~ 3548988 (+)
G109301 LOC103376870 non-coding upstream 305177 3340089 ~ 3393931 (+)
G109260 NA non-coding upstream 462707 3234905 ~ 3236401 (+)
G109218 NA non-coding upstream 629880 3016779 ~ 3069228 (+)
G109217 NA non-coding upstream 670462 3004856 ~ 3028646 (+)
G109392 NA non-coding downstream 7740 3722519 ~ 3755041 (+)
G109412 NA non-coding downstream 15108 3729887 ~ 3730840 (+)
G109396 NA non-coding downstream 57770 3772549 ~ 3774544 (+)
G109523 LOC100846954 non-coding downstream 195182 3909961 ~ 3911048 (+)
G109530 NA non-coding downstream 221201 3935980 ~ 3936902 (+)
AMCG00006387 NA other upstream 50197 3637743 ~ 3648911 (+)
AMCG00006379 NA other upstream 77312 3570039 ~ 3621796 (+)
AMCG00006385 NA other upstream 86350 3599241 ~ 3612758 (+)
G109362 NA other upstream 192429 3503181 ~ 3506679 (+)
G109309 NA other upstream 333543 3361354 ~ 3365565 (+)
AMCG00006393 ppp1r11,LOC107711309 other downstream 144155 3858934 ~ 3864732 (+)
G109538 NA other downstream 248818 3963597 ~ 3963996 (+)
G109570 NA other downstream 438037 4152816 ~ 4155749 (+)
AMCG00006413 NA other downstream 444744 4159523 ~ 4167952 (+)
G109714 NA other downstream 762155 4476934 ~ 4477570 (+)

Expression


Co-expression Network