G109572



Basic Information


Item Value
gene id G109572
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4156442 ~ 4156969 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU137201
CCTCGGAGACCTCATCCTCTAGCTCAGCCAGAACAGTGTGTGCTGACTTGCGTCTGCTCTTGGATGAGCGGCCCGCGGCGtagcaggaggaggaagaggaggaggaggaggcgggagGCGGGGTGAAGGTGGCCGAGAGGGCGCGCGGCCGGGTCAGCGGTGGTTTCTCCGGGTGGAAAGTCAGCGGGCGAGCCTGCAGCTTACTGATACTCCCGATGGAGTTGAGAATGACAGTGGCCTTGTTCGAGGGGAGCGGCGCAGAGAGCTCGGGGGTGCGGCACAGCGTCTTGACCCGCCCGGCGCTGGGCAACATGGAGGGCTGCCCGCTCAGGGTGGTGAAGGACGAGGCCTTGGGCACCGTGATGGCGTCGAACTCCTGAGGCCGTACGAGCACCTTCTGGAAGAGGAAGTAGAACTCGGGGCTGGCGTCCGAGCCCGGGGCGGCCTGGTCTCCCTCGCCAAACGTCAGGGTGTCGCCGTCGCTGAGCTCCGTGCGCTCGCCACGCTTCAGACGGGAATCGTTCACCC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU137201 True 528 lncRNA 0.66 1 4156442 4156969

Neighbor


gene id symbol gene type direction distance location
AMCG00006412 NA coding upstream 4751 4147704 ~ 4151691 (+)
AMCG00006420 NA coding upstream 21876 4133868 ~ 4134566 (+)
AMCG00006411 LOC108414231,LOC106024139,LOC101061046,LOC101068669,LOC105419728,LOC105419724,LOC105419151,LOC105416979,LOC107747774,LOC105419136 coding upstream 56724 4091688 ~ 4099718 (+)
AMCG00006403 NA coding upstream 74276 4079626 ~ 4082166 (+)
AMCG00006408 NA coding upstream 231922 3922421 ~ 3924520 (+)
AMCG00006423 NA coding downstream 22081 4179050 ~ 4185310 (+)
AMCG00006424 ino80e coding downstream 30624 4187593 ~ 4190086 (+)
AMCG00006432 NA coding downstream 97365 4254334 ~ 4266243 (+)
AMCG00006433 NA coding downstream 194683 4351652 ~ 4360196 (+)
AMCG00006438 NA coding downstream 284992 4441961 ~ 4450469 (+)
G109571 NA non-coding upstream 236 4155964 ~ 4156206 (+)
G109541 NA non-coding upstream 121134 3976728 ~ 4035308 (+)
G109532 NA non-coding upstream 212448 3943769 ~ 3943994 (+)
G109530 NA non-coding upstream 219540 3935980 ~ 3936902 (+)
G109523 LOC100846954 non-coding upstream 245394 3909961 ~ 3911048 (+)
G109573 NA non-coding downstream 767 4157736 ~ 4159191 (+)
G109575 NA non-coding downstream 11115 4168084 ~ 4169106 (+)
G109597 NA non-coding downstream 73265 4230234 ~ 4230484 (+)
G109656 NA non-coding downstream 157662 4314631 ~ 4316465 (+)
G109660 NA non-coding downstream 171900 4328869 ~ 4329278 (+)
G109570 NA other upstream 693 4152816 ~ 4155749 (+)
G109538 NA other upstream 192446 3963597 ~ 3963996 (+)
AMCG00006393 ppp1r11,LOC107711309 other upstream 291710 3858934 ~ 3864732 (+)
AMCG00006387 NA other upstream 507531 3637743 ~ 3648911 (+)
AMCG00006385 NA other upstream 543684 3599241 ~ 3612758 (+)
AMCG00006413 NA other downstream 2554 4159523 ~ 4167952 (+)
G109714 NA other downstream 319965 4476934 ~ 4477570 (+)
AMCG00006445 NA other downstream 367837 4524806 ~ 4527738 (+)
G109781 NA other downstream 867926 5024895 ~ 5025906 (+)
G109795 wasl,wasla,LOC105018628 other downstream 923912 5080881 ~ 5098698 (+)

Expression



Co-expression Network