G109573


Basic Information

Item Value
gene id G109573
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4157736 ~ 4159191 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU137202
TGGCTGCTGTGGTCCACCATATACACCCTCCATCCTTCATcctgctcttcctcttccttctgCGCCTGCAGCTCGGCGTGGATTCGCGAAATGAGCTCCGGCCGACTCTCCGACTGCAGCGTCACGTCGCACAGCTCGGCGCGCCGGCCCAGGCGGAACACGCAGCGGGGCAGGGCCGGCCTGAAGGTGTACAGGTCCCGGGCGGCGTCCGAGCTGGAGCCCGAGGACGGTCCGATACGCAGCAACTGGAAGCAAGGCTGTACTTCCGATAACATGCCGGGCGGGGACCCCCGACACGCCGAGGGGAGGATCAGGCGGTGGGGATGACCGGGCGAATTGGTTTCAAGAATGGAAGTGGGGATGCTACACTTTAAAACATAACTTCTGACATCTTTCTGTAGCCTTTGCACCActactgtgtgtgcgtgttttaattattaattaattattatgacaCTTTCAGCACATGCACTGACTACTAAATATGAACTGTGACATCAGAAGTCAGATTGCACCCTAAGGATCACCTAGACAAAACACCTGTCGGATTACGGTGTTTTGTACCTATTCAAATACATGAgcgtaaacaaacaaacacaaatcagatGAGACACTGTTGCAATTATGAAATCTGCCTAAAATACAACAGTTATTAACTTGAAAGCCGTTTACGAAATGCACTCAAATCAATggtgtttttaattgcttagTTCGGGAAAAATAAGCAAGACCGACTTGTATATTCACTTATAATTCCTGTTTTGAAAGAAGACACGGTTCTCACCTGTCCGGCTTAAACTAAAGGCATTTCTCCAGGAGACTCGACCTGTCAGTCCTGCCTCTATCCTCGGAAGACGCACTCAGAGGAAACCAGGGATTGATCGACAGCTGGCCTATGTTTACCCCTTTCAAGCATCACAAAACGACCGACAAATCGTGTAATTTGGAAAGACTGTGTAGCCTGtcgttggttttattttaattcttatttaaaatcttACTAAAAGCGGTGCTGGTTGCGACAAGGAACGCGTTTCAGACACTACGCCCATGTCCTGTGGCTTCAAATACTGCCATCGATAAACAcgcaaatacacaaataaagagaaaacaatccTATGTACACGGAGCAAATAAAACACTTGGAGTCCAGTATTTACGCCATAAAGTGTGTCCGCAGGTCCTGTGTGATATGTGTCAAGGGCTGATATGTGTCAAAGCAGCTGTTTCCGGCTCTGCCAGCTATATGACCTACATATAGATTTGAGATCTTGATCGATTGCAGTGGTCCTTAAATTCACCCTCCCAAGCGACCACCTGCCGAGCCCCCCCACCGATCACTCACATCGACCTGCAGTTATCCAGCGATCCGCCGTTAGTGTGCAATGAGgtggggggggaaagaaaaagctttGTGAGTTGCACGGCCGCACCGTCCTCTCCCTGGTTCGTGCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137202 True 1456 lncRNA 0.49 1 4157736 4159191

Neighbor

gene id symbol gene type direction distance location
AMCG00006412 NA coding upstream 6045 4147704 ~ 4151691 (+)
AMCG00006420 NA coding upstream 23170 4133868 ~ 4134566 (+)
AMCG00006411 LOC108414231,LOC106024139,LOC101061046,LOC101068669,LOC105419728,LOC105419724,LOC105419151,LOC105416979,LOC107747774,LOC105419136 coding upstream 58018 4091688 ~ 4099718 (+)
AMCG00006403 NA coding upstream 75570 4079626 ~ 4082166 (+)
AMCG00006408 NA coding upstream 233216 3922421 ~ 3924520 (+)
AMCG00006423 NA coding downstream 19859 4179050 ~ 4185310 (+)
AMCG00006424 ino80e coding downstream 28402 4187593 ~ 4190086 (+)
AMCG00006432 NA coding downstream 95143 4254334 ~ 4266243 (+)
AMCG00006433 NA coding downstream 192461 4351652 ~ 4360196 (+)
AMCG00006438 NA coding downstream 282770 4441961 ~ 4450469 (+)
G109572 NA non-coding upstream 767 4156442 ~ 4156969 (+)
G109571 NA non-coding upstream 1530 4155964 ~ 4156206 (+)
G109541 NA non-coding upstream 122428 3976728 ~ 4035308 (+)
G109532 NA non-coding upstream 213742 3943769 ~ 3943994 (+)
G109530 NA non-coding upstream 220834 3935980 ~ 3936902 (+)
G109575 NA non-coding downstream 8893 4168084 ~ 4169106 (+)
G109597 NA non-coding downstream 71043 4230234 ~ 4230484 (+)
G109656 NA non-coding downstream 155440 4314631 ~ 4316465 (+)
G109660 NA non-coding downstream 169678 4328869 ~ 4329278 (+)
G109662 tubb,LOC108432309 non-coding downstream 175132 4334323 ~ 4335450 (+)
G109570 NA other upstream 1987 4152816 ~ 4155749 (+)
G109538 NA other upstream 193740 3963597 ~ 3963996 (+)
AMCG00006393 ppp1r11,LOC107711309 other upstream 293004 3858934 ~ 3864732 (+)
AMCG00006387 NA other upstream 508825 3637743 ~ 3648911 (+)
AMCG00006385 NA other upstream 544978 3599241 ~ 3612758 (+)
AMCG00006413 NA other downstream 332 4159523 ~ 4167952 (+)
G109714 NA other downstream 317743 4476934 ~ 4477570 (+)
AMCG00006445 NA other downstream 365615 4524806 ~ 4527738 (+)
G109781 NA other downstream 865704 5024895 ~ 5025906 (+)
G109795 wasl,wasla,LOC105018628 other downstream 921690 5080881 ~ 5098698 (+)

Expression


Co-expression Network