G109616


Basic Information

Item Value
gene id G109616
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4266827 ~ 4268470 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU137257
GAGGTAcatgtgttttcattataattattcttataGAACAATTCACATTCCAAGTGTTAACATATCATTATTTGGCAGGTAAATGCTGTGgcacaacacacaaataatatgcacaaatacacaaagaTGTATTAATCAATATCACAATTTCAGCTTTCTCCAGAGCCTAGCACACAGTGAGCAAACACAAGTGTACCAGTAACAATTTACAGCTGATTagcattacaaattacagtggAAAGTATTAATATAAAGATTAAATTAAGTGTCATTAATCACAGTCTAATGATAATTTGTTGTTATTAAGGAATGAAACATGTACCCTCTATGTTAGCACTTTGTAACTACACCAGtcagccaaaacattatgaccacctgcctaatattgtgtaggtcccccttttacTGCTAAAACAGCcttgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaaattgggaggtggggcctccatggatcggacttgtttgtccagcacatcccatagatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttcaAATCgatgttgtgttcctcaaaccattcctgaacaatttttgctttgtggcagggcgtattatcctgctgaaagaggccaatgccatcagggaataccatgtccatgaaagggtgtacatggtctgcaacaatgtttaggtaggtggtacgtgtcaaagtaacatccacatgaatggcaggacccaaggtttcccagcagaacattgcccaaagcatcacactgcctccgccggcttgccttcttcccatagtgcatcctggtgccatgtgttatCCAGGTAAACAACGCATACCCACACGACCATACCCGTGATGTAAtagaaaatgtgattcatgaGACCAGGCcactttcttccattgctccgtgatccagttctgatgctcacgtgcccattggaggcgctttcggcagtggacacggctcagcatgggcaccctgactggtctgcggctacgcagcccaaTATGCagcaaactgtgatgcactgtgtgttctgacacctttctgtcagaaccagcattcactttttcagcaatttgagctacagtagctcgtctgttggatcggaccacacgggccagccttcacaccccacgtgcatcaatgagccttggccgcccatgaccctgtggCTGGTtaaccgcttttccttccttggaccacttttgataggtactgaccactgcagactgggaacatcccacaagagctgcagttttggagatgctctcacccagtcgtctagccatcacaatgtggcccttgtcaaagtcgctcagatccttacgcttgcccattttgcttgcttctaacacatcaacttttaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcacttcacctgtcagtggtcataatgttatggctgattggtgtatatcaACTGTGAATCAACTTTTTAATCATATATGGAGTTAATCACAAGGAACCTCACAATACTTAATAATGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137257 True 1644 lncRNA 0.45 1 4266827 4268470

Neighbor

gene id symbol gene type direction distance location
AMCG00006428 NA coding downstream 15104 4245185 ~ 4251723 (-)
AMCG00006427 NA coding downstream 24268 4233664 ~ 4242559 (-)
AMCG00006430 NA coding downstream 36302 4222078 ~ 4230525 (-)
AMCG00006426 NA coding downstream 48956 4200761 ~ 4217871 (-)
AMCG00006425 NA coding downstream 69032 4195320 ~ 4197795 (-)
AMCG00006435 NA coding upstream 46252 4314722 ~ 4330918 (-)
AMCG00006437 zgc:153426,LOC107393497,LOC106534675,LOC100712088,LOC102780606,LOC103367161,LOC107711200 coding upstream 67202 4335672 ~ 4336182 (-)
AMCG00006434 NA coding upstream 98780 4367250 ~ 4368596 (-)
AMCG00006436 NA coding upstream 108211 4376681 ~ 4387311 (-)
AMCG00006440 NA coding upstream 152559 4421029 ~ 4430984 (-)
G109635 NA non-coding downstream 99588 4166951 ~ 4167239 (-)
G109634 NA non-coding downstream 100238 4166328 ~ 4166589 (-)
G109632 NA non-coding downstream 102270 4163982 ~ 4164557 (-)
G109628 NA non-coding downstream 127558 4139034 ~ 4139269 (-)
G109619 NA non-coding downstream 183375 4081807 ~ 4083452 (-)
G109689 NA non-coding upstream 39703 4308173 ~ 4311951 (-)
G109692 NA non-coding upstream 75917 4344387 ~ 4349812 (-)
G109735 NA non-coding upstream 245840 4514310 ~ 4515575 (-)
G109736 NA non-coding upstream 247467 4515937 ~ 4521369 (-)
G109761 NA non-coding upstream 478500 4746970 ~ 4747234 (-)
AMCG00006415 NA other downstream 89775 4168050 ~ 4177052 (-)
G109633 NA other downstream 101227 4164934 ~ 4165600 (-)
AMCG00006414 NA other downstream 108704 4152816 ~ 4158123 (-)
AMCG00006398 NA other downstream 451310 3730042 ~ 3815517 (-)
AMCG00006390 NA other downstream 538308 3698885 ~ 3728519 (-)
AMCG00006429 NA other upstream 1946 4270416 ~ 4277155 (-)
AMCG00006476 NA other upstream 1309000 5577470 ~ 5603733 (-)
AMCG00006491 NA other upstream 1745634 6014104 ~ 6042924 (-)
G110140 NA other upstream 2516843 6785313 ~ 6785851 (-)
G110195 NA other upstream 2809919 7078389 ~ 7107138 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000065_04775143_04786346 NA coding CI01000065 null 4771137 ~ 4786876 (+)
striped catfish (Pangasianodon hypophthalmus) G182877 NA unknown NC_047605.1 CM018551.1 16913258 ~ 16922922 (+)