G109656


Basic Information

Item Value
gene id G109656
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4314631 ~ 4316465 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU137307
TTATAATGCAACATTAAGACATTAAGCTTATAATTAAACTCTATGAAAGTCTTAATCactttataaaactgaaataattcacTGACACACGTAAGttacaaaatactgtttattgagGAGGGATAAAACAACAACCTAGTATAATACACTTCCGTGGGCAGTTTCCTGTTGTTCTTAAAATCATTCTgcaaacaaacaaaataattcacattCCATGAAAAGCCGAGGGGCTCTGGGCCTGACTGTGGCAGAGAGCATGCTGGGAACCCAGGGGTCGACTCAATCGCTGTACTTTACCCCACGTGAGCAGCGTGAGCCCAGCTGAGCTCTACTTGTCTGCGTCGTTTCTCCCATATTGTCATTTCTCCCTGAGAGAAAGACGCAGCCTTTGCTATGACCCAGAGCCAGCCGTGTTCCCGGAGAGACGACCAGCAGGTGTTACAGGCCTTTCTGCATCTCTCGTCACCAAGCGCACGGGAACACGCCACCAATTACATCAGTAAATCGACTAATTTAAGCAGTTTCACCATTCAGATACAATAAAAACTCTCTGGCCCTCTTAGCTTCAGTCTCTTCATGCACAGCTCAGAAGAAAGATACGTTTTAAAAGGAGTTTAAAAGGTTAAactagcatttaaaaaaatacatacatttcaattttccTGGAGAACTGAATAATTCAATTTTAGtaaatgcaattgaaaaaaaGGCATCTCATGGAGGTTTTACATACGATGCTCCCAACTGTCTGAGCTGTTCTGAATCAtgattgttctgtttttattggttCTTACACAGCGGTTCCCAACCCAGTGGGCCCACCAGCCTGGGGTCTGGCCCACTTTTTTAGGTTCTCGTTTTCATTAGACCAAGAGCATGAACACGGGTAAGAAGTGGGTCAACGTGGGCCAGAGCAGCCTGCCTCAGCTCTGACCCGGGCAGAGCGAGACTAAAGGCCCGGCAACTGACTCGCTTCTTGAAACTGCGGGGTGGGAGTGTGGACCTGCCCGGGCCTGGCAGCGTGTCCCAACCCGGGTGGGGGGTGCCAGCGTGAGAGGAGCAGTGGGCATGTCGGGTTCTCCAGCACAGCTAGGTTTGGTCCCCTTGGGTGTTAAAAGGAGAACATGCCAAGGCACCGGCATGATACTTTTAAACGAGCACAGTACCAAAACACGGCCTTCACAGACGATCAAAGTTCACACACAGatatctgtatatattgtatCATAGGTATTTATTATACACTTGATTCTACActtgttcttatgttttaataactTAGCAATGGTGCCCTACAGACAGACCTTTTTAaaaccttgtgtttttaattcatatcCACACAATGCACTTCAGCGCACAGCAACAGGAAAGTCTCGTTTCATTGAGGCCAGCAGTCTCTCAATCTGGGGTTGTAGGGTCTTCTAACCGGCAGGGTTCATAGGTCCTCAGAGTCAGGGCTCAGGTGTGCTCAATCttatctgtctgtgtgagatCAGTGGGAAAGGGCTGCCGAGAGAAAAACTCCAGTGTGGGACGCAGACCGGACGACAGCGCGGCTCCAAAAGGCACGAGTTCAACACCACCTTTTCTCCCATCTGGTGCAGGTGCCTACCTCTTTCTccggcctcctcctcctcgccctTTAGCCTCGGCCTTGAGCTCGAACCCAGGCCCGGTGAGGCAGTGGCAGTCCAGCTCGGCACTCTGCCGCAGGATGCCGGTGAGCAGAAATTCTGCGCTGACCACCGGTAGACCGGCGCGGAGGGCGGGCTGGCAGCGGGTGGCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137307 True 1787 lncRNA 0.49 2 4314631 4316465

Neighbor

gene id symbol gene type direction distance location
AMCG00006432 NA coding upstream 48388 4254334 ~ 4266243 (+)
AMCG00006424 ino80e coding upstream 124545 4187593 ~ 4190086 (+)
AMCG00006423 NA coding upstream 129321 4179050 ~ 4185310 (+)
AMCG00006412 NA coding upstream 162940 4147704 ~ 4151691 (+)
AMCG00006420 NA coding upstream 180065 4133868 ~ 4134566 (+)
AMCG00006433 NA coding downstream 35187 4351652 ~ 4360196 (+)
AMCG00006438 NA coding downstream 125496 4441961 ~ 4450469 (+)
AMCG00006446 NA coding downstream 172032 4488497 ~ 4496374 (+)
AMCG00006444 NA coding downstream 179941 4496406 ~ 4516083 (+)
AMCG00006442 NA coding downstream 225647 4542112 ~ 4562075 (+)
G109597 NA non-coding upstream 84147 4230234 ~ 4230484 (+)
G109575 NA non-coding upstream 145525 4168084 ~ 4169106 (+)
G109573 NA non-coding upstream 155440 4157736 ~ 4159191 (+)
G109572 NA non-coding upstream 157662 4156442 ~ 4156969 (+)
G109571 NA non-coding upstream 158425 4155964 ~ 4156206 (+)
G109660 NA non-coding downstream 12404 4328869 ~ 4329278 (+)
G109662 tubb,LOC108432309 non-coding downstream 17858 4334323 ~ 4335450 (+)
G109655 NA non-coding downstream 57683 4374148 ~ 4377377 (+)
G109713 NA non-coding downstream 151926 4468391 ~ 4473008 (+)
G109721 NA non-coding downstream 202452 4518917 ~ 4521249 (+)
AMCG00006413 NA other upstream 146679 4159523 ~ 4167952 (+)
G109570 NA other upstream 158882 4152816 ~ 4155749 (+)
G109538 NA other upstream 350635 3963597 ~ 3963996 (+)
AMCG00006393 ppp1r11,LOC107711309 other upstream 449899 3858934 ~ 3864732 (+)
AMCG00006387 NA other upstream 665720 3637743 ~ 3648911 (+)
G109714 NA other downstream 160469 4476934 ~ 4477570 (+)
AMCG00006445 NA other downstream 208341 4524806 ~ 4527738 (+)
G109781 NA other downstream 708430 5024895 ~ 5025906 (+)
G109795 wasl,wasla,LOC105018628 other downstream 764416 5080881 ~ 5098698 (+)
AMCG00006460 wasl,wasla,LOC107698525 other downstream 777806 5094271 ~ 5107022 (+)

Expression


Co-expression Network