G109662 (tubb,LOC108432309)


Basic Information

Item Value
gene id G109662
gene name tubb,LOC108432309
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4334323 ~ 4335450 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU137314
CCTCTGCGCGGACCTAGGCGTCCTCCTCGGCCTCTTCTTCGAACTCGCCTTCCTCCTCAGCCGTGGCATCCTGGTACTGCTGGTACTCAGACACCAGGTCGTTCATGTTGCTCTCAGCCTCGGTGAACTCCATCTCATCCATGCCCTCGCCGGTGTACCAGTGAAGGAAGGCCTTGCGCCGGAACATGGCAGTGAACTGCTCGGAGATGCGCTTGAAGAGCTCCTGGATGGCCGTGCTGTTACCGATGAAGGTGACGGCCATCTTGAGGCCACGGGGCGGGATGTCGCACACGGCGGTCTTCACGTTGTTGGGGATCCATTCCACGAAGTAGGAGCTGTTCTTGTTCTGCACGTTCAGCATCTGCTCATCCACCTCCTTCATGGACATGCGGCCGCGGAAGACGGCGGCCACGGTGAGGTAGCGGCCGTGGCGCGGGTCGCAGGCCGCCATCATGTTCTTGGCGTCGAAGACCTGCTGGGTGAGCTCAGGCACTGTGAGGGCACGGTACTGCTGGCTGCCCCGGCTGGTGAGCGGCGCGAATCCGGGCATGAAGAAGTGCAGCCGGGGGAAGGGCACCATGTTGACAGCCAGCTTGCGGAGATCGGCGTTGAGCTGCCCGGGGAAGCGTAGGCAGGTGGTGACGCCGCTCATGGTGGCCGAGACCAAGTGGTTGAGGTCCCCGTAGGTGGGGGTGGTGAGCTTCAGCGTGCGGAAGCAGATGTCGTAGAGCGCCTCGTTGTCGATGCAGTAGGTCTCGTCTGTGTTCTCCACCAGCTGGTGCACCGACAGGGTGGCGTTGTAGGGCTCCACCACACTGAAGGTGTTCATGATGCGGTCGGGGTACTCCTCCCGGATCTTGCTGATCAGCAGGGTGCCCATCCCGGAGCCCGTGCCGCCGCCCAGCGAGTGGGTGAGCTGGAAGCCCTGCAGACAGTCGCAGCTCTCGGCCTCCTTCCTCACCACGTCCAGGACAGAGTCCACCAACTCCGCCCCCTCGGTGTAGTGGCCCTTAGCCCAGTTGTTGCCGGCACCGCTTTGGCCTGCGGAGAGAGGGAGTTGTACAGAATGAGAGATCGTCCACAGGCTGTACACTATTG

Function

symbol description
tubb Enables MHC class I protein binding activity and ubiquitin protein ligase binding activity. Involved in cellular process. Located in several cellular components, including cytoplasmic ribonucleoprotein granule; microtubule; and nuclear envelope lumen. Implicated in complex cortical dysplasia with other brain malformations 6 and congenital symmetric circumferential skin creases 1.

NR:

description
PREDICTED: tubulin beta chain

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137314 True 1098 lncRNA 0.63 2 4334323 4335450

Neighbor

gene id symbol gene type direction distance location
AMCG00006432 NA coding upstream 68080 4254334 ~ 4266243 (+)
AMCG00006424 ino80e coding upstream 144237 4187593 ~ 4190086 (+)
AMCG00006423 NA coding upstream 149013 4179050 ~ 4185310 (+)
AMCG00006412 NA coding upstream 182632 4147704 ~ 4151691 (+)
AMCG00006420 NA coding upstream 199757 4133868 ~ 4134566 (+)
AMCG00006433 NA coding downstream 16202 4351652 ~ 4360196 (+)
AMCG00006438 NA coding downstream 106511 4441961 ~ 4450469 (+)
AMCG00006446 NA coding downstream 153047 4488497 ~ 4496374 (+)
AMCG00006444 NA coding downstream 160956 4496406 ~ 4516083 (+)
AMCG00006442 NA coding downstream 206662 4542112 ~ 4562075 (+)
G109660 NA non-coding upstream 5045 4328869 ~ 4329278 (+)
G109656 NA non-coding upstream 17858 4314631 ~ 4316465 (+)
G109597 NA non-coding upstream 103839 4230234 ~ 4230484 (+)
G109575 NA non-coding upstream 165217 4168084 ~ 4169106 (+)
G109573 NA non-coding upstream 175132 4157736 ~ 4159191 (+)
G109655 NA non-coding downstream 38698 4374148 ~ 4377377 (+)
G109713 NA non-coding downstream 132941 4468391 ~ 4473008 (+)
G109721 NA non-coding downstream 183467 4518917 ~ 4521249 (+)
G109767 NA non-coding downstream 587682 4923132 ~ 4924794 (+)
G109779 NA non-coding downstream 682639 5018089 ~ 5020403 (+)
AMCG00006413 NA other upstream 166371 4159523 ~ 4167952 (+)
G109570 NA other upstream 178574 4152816 ~ 4155749 (+)
G109538 NA other upstream 370327 3963597 ~ 3963996 (+)
AMCG00006393 ppp1r11,LOC107711309 other upstream 469591 3858934 ~ 3864732 (+)
AMCG00006387 NA other upstream 685412 3637743 ~ 3648911 (+)
G109714 NA other downstream 141484 4476934 ~ 4477570 (+)
AMCG00006445 NA other downstream 189356 4524806 ~ 4527738 (+)
G109781 NA other downstream 689445 5024895 ~ 5025906 (+)
G109795 wasl,wasla,LOC105018628 other downstream 745431 5080881 ~ 5098698 (+)
AMCG00006460 wasl,wasla,LOC107698525 other downstream 758821 5094271 ~ 5107022 (+)

Expression


Co-expression Network