G109779



Basic Information


Item Value
gene id G109779
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5018089 ~ 5020403 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU137458
ctgttttaacatttttcctGGCAGtctatttttatcttttatttttttatccattttTTGTATAACTACTTGTTTGTACTGTTTGAGTGACACCAATGCCTTCAAATGCTTTCCAAAAATGAAAGTAGCATAGCAGAAgaaaagcacacatttttgtAACAGTGAGAATGGCTCAAACTATTATTAgtttgggaaaacaaacaaacacaaatccactactgatttattttggtttggtaTCAGTATAGCATTGATGATtgcaactgaatttaccaacgCCAATTGATATCTGTTCGGTATGCTTCcaatttctcaaaataattatatcccTACAGGCTTTAATTTCATATCCAAATATACTGCATGCATTGTGCTATATTTACTTTCTTGATTAGAAAAACCCTTTTAAGGCATTTTTAAACTGGGCTTTTATAAGACTGAATCTCAAAATTAGTACAAATATTTCATTGACTTTTAACAGTACTTTATGTGTTCAGAAACCTCAAAACCTCCTCAAAGCGTATGAGATCAAATTTGATTTTCAGGATTTCATTGTTGAACCACTCTCTCTTTTAAACAACAGAGCTcagtttaatttgcatgttcaaaatgaaagacaaaGCTTATTAATCTGCTGTTTGtacagttttgcttttgtgtgtgttacttCATGTAAGGCCAGATGCagttttgcatgttttgcagGGCAGGGCAATGGATGCAAACAGCAGGGAGGTAATTTGCAGTCAAAGACAAAAGTATTCAGTTTCCTACAGAAACTATGCAAACTAACTGGAAGAAAAAGTTAACACTTCACcttaaatattgatttcaaCCATTTAAAACTAATATCCTATATTTACAAAGGCATTTTCTGTTAGTAATTGCCATTTAAACAGTGACAAATGTCCATAGAGTGTATAAGAGATTGTGTATAACAAGATTAATCAGGCAGactgaaaattattatttatttatttatgtatttattggcagaaaGTTGTAGTTCAAGGCtagaaaataaagatataaagtaaacaaagaagCTGGAAGTTATGTAAAGATACTTGGCATCCATAGCAGTGCCAGATCAGTTACTGTACTGAGAAATAAAGATGAAGTACCATTTAATATGATAGATCAAGCAATGTGCATgttaacacaatacacaaactGGTTCAAAGGTCCAAAATTAAAACCTTGAGGAACCAGTCAATTATTCAGCAGCAAACGAAATTTCACTTTGTAGCAGAACAAAGATTTCCAAAGAGACGGATCTGAAATGAGAGCTAGTAAGTCCTAGGACAACATCCTACGTTGTGGTATGTCAGAACCAAAGTTGACATCAACACAAAGGCCAAATGCCTGCAACGAATGGTTATTGTTGTGGTTACTGTTGAGCGTTGTGCTGGTTCCTTGATGATGTGGATATATTTAACTTGTGGGGCATGATATCTGAAGGAAACTGCTTCAAAATCTCCAGTCCATCTGCTGACTGAAACAATACCGATACGTCACAAGCTTATCAGAGCAGCCATGACAGCGACTCAAAGGACGCAGTCTCCCCAACGCAGCTCCTAACTGACCTTTGGCATCAGCTGATCGGATTCCggttaaaatatattgcagaggGAAGTGAAGGCAGCTGGAAAGCATCATAAACTGAATCAATAAAAGGCCTCTTGTGCCGGAgaatggaaatacaaataaacattgacTCACTGGACAGATGTTGACAAGTCTTCCAAAGTGACGCAACCTTTGCATGCTGAAGTAGAAGCCAAAGTACACAATGCGTACTTGCAGTGCATGTGAGCACTATTGTGTGCATGCATGACATTGTTCTTTTCcagtgtgcttttatttttaatacattttaatatgatgcAGATTTCGTCCCCCCTTTCAAATGAATATAAcaatgcagttttaatttttgactttatttaattttgcataaaAAAGCATGACTTTGCACCGTGGTCTAATGTCCAAACTTCTTTCAAAGGTTTGGATAACAACAGGCATTTACTAGACAATGATACCACTTAAGATTCTCCAAAACTACATTAATTAAGCACTTAATCGGCTTTGAAAACAAACCTAAACGCCCAGAGGTACTTTGAGCATATCTTGATTGTGTGTTGGTGTATGGGTAAACCAAAGGAAGATATtagtagaaaaaatatttaaaataaaaataataataatgttttgtattccACATGAgacagtaaatgtaaataacaacaataaaaagcaataagtCGTATGGCACTACATATTCTATTTATTGTTACAAATAATGCTATTAA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU137458 True 2315 lncRNA 0.35 1 5018089 5020403

Neighbor


gene id symbol gene type direction distance location
AMCG00006455 NA coding upstream 1403 5015646 ~ 5016686 (+)
AMCG00006452 NA coding upstream 50056 4961206 ~ 4968033 (+)
AMCG00006454 NA coding upstream 87180 4926843 ~ 4930909 (+)
AMCG00006453 NA coding upstream 91309 4921018 ~ 4926780 (+)
AMCG00006451 grm8 coding upstream 311652 4699666 ~ 4706437 (+)
AMCG00006461 NA coding downstream 59347 5079750 ~ 5090677 (+)
AMCG00006458 NA coding downstream 119139 5139542 ~ 5149792 (+)
AMCG00006468 NA coding downstream 136195 5156598 ~ 5181731 (+)
AMCG00006464 NA coding downstream 189625 5210028 ~ 5231466 (+)
AMCG00006467 NA coding downstream 223375 5243778 ~ 5301376 (+)
G109767 NA non-coding upstream 93295 4923132 ~ 4924794 (+)
G109721 NA non-coding upstream 496840 4518917 ~ 4521249 (+)
G109713 NA non-coding upstream 545081 4468391 ~ 4473008 (+)
G109655 NA non-coding upstream 640712 4374148 ~ 4377377 (+)
G109662 tubb,LOC108432309 non-coding upstream 682639 4334323 ~ 4335450 (+)
G109780 NA non-coding downstream 893 5021296 ~ 5022178 (+)
G109786 NA non-coding downstream 24013 5044416 ~ 5044633 (+)
G109837 NA non-coding downstream 332053 5352456 ~ 5353170 (+)
G109933 NA non-coding downstream 525804 5546207 ~ 5546436 (+)
G109978 NA non-coding downstream 779197 5799600 ~ 5804559 (+)
AMCG00006445 NA other upstream 490351 4524806 ~ 4527738 (+)
G109714 NA other upstream 540519 4476934 ~ 4477570 (+)
AMCG00006413 NA other upstream 850137 4159523 ~ 4167952 (+)
G109570 NA other upstream 862340 4152816 ~ 4155749 (+)
G109538 NA other upstream 1054093 3963597 ~ 3963996 (+)
G109781 NA other downstream 4492 5024895 ~ 5025906 (+)
G109795 wasl,wasla,LOC105018628 other downstream 60478 5080881 ~ 5098698 (+)
AMCG00006460 wasl,wasla,LOC107698525 other downstream 73868 5094271 ~ 5107022 (+)
AMCG00006459 NA other downstream 106954 5127357 ~ 5134715 (+)
G110023 NA other downstream 958659 5979062 ~ 5982909 (+)

Expression



Co-expression Network