G109837


Basic Information

Item Value
gene id G109837
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5352456 ~ 5353170 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU137535
TCAACCAAATACTCACGATATCAGTGAAAACCCCTGGCCTCATGAGGTTGATCATCTTGGCCACCTGGTAGACATCGATGGAGTTCTCCGCCTCCAGCTGGTGCCGGCCGTGACGCCCCCGTGCCTGCAGACCACAGCGAGGGGGAGAGCAAAATTTTGTCTCTGAGGTAATCAACCGACCAGGAGAGCAAACCAGAGCATGGATAGCAGAGAGCAGATGGGGCCGGGGGTCGGAGCTGAGGCAATTGCCTTCATCACTGTGTACTCTGGCTCTAATGATCCTGTCTCTCTGGAATGGAACTTGTTTTTGAGTAGGCATGTTGTGTTGATATCCCTAAACGGACTTTAATAACAATTCTAGGCTCACTGGGACTTAACTCTGCTTTCTGAATTCTAAGTATGGAATATTTTAATCATACCTAAAGGATTTAACTGCATTCAATGTGTCGTCGTCCTGTATCAGTTTCATGACTTTTTGAAATGTCTGAACTCCCTAGCTTCACAGACAGGGATGTAATCAATCAGTTAAAGACTCGGATCATACTCATCGTGCACGATCATCGGGCCGTCTCGAGAAGCCGCCTCCTCTTTGATCAGGTTGATCAGCTCGAAGGTCTTACTCATGGGACTGTCTGGATTCGGCCATTTTGGAGACTTGTACTGTCGCACTTCCAAGACGTAGTCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137535 True 687 lncRNA 0.48 2 5352456 5353170

Neighbor

gene id symbol gene type direction distance location
AMCG00006465 NA coding upstream 6464 5322363 ~ 5345992 (+)
AMCG00006466 NA coding upstream 41040 5308497 ~ 5311416 (+)
AMCG00006467 NA coding upstream 51080 5243778 ~ 5301376 (+)
AMCG00006464 NA coding upstream 120990 5210028 ~ 5231466 (+)
AMCG00006468 NA coding upstream 170725 5156598 ~ 5181731 (+)
AMCG00006469 dld,LOC106561021 coding downstream 74560 5427730 ~ 5433636 (+)
AMCG00006475 NA coding downstream 137712 5490882 ~ 5491169 (+)
AMCG00006478 NA coding downstream 240582 5593752 ~ 5596707 (+)
AMCG00006480 slc2a13,LOC106609118,LOC106575984,LOC103369283 coding downstream 346447 5699617 ~ 5724043 (+)
AMCG00006479 NA coding downstream 410184 5763354 ~ 5769646 (+)
G109786 NA non-coding upstream 307823 5044416 ~ 5044633 (+)
G109780 NA non-coding upstream 330278 5021296 ~ 5022178 (+)
G109779 NA non-coding upstream 332053 5018089 ~ 5020403 (+)
G109767 NA non-coding upstream 427662 4923132 ~ 4924794 (+)
G109721 NA non-coding upstream 831207 4518917 ~ 4521249 (+)
G109933 NA non-coding downstream 193037 5546207 ~ 5546436 (+)
G109978 NA non-coding downstream 446430 5799600 ~ 5804559 (+)
G110024 NA non-coding downstream 630620 5983790 ~ 5984250 (+)
G110081 NA non-coding downstream 865361 6218531 ~ 6220086 (+)
G110147 NA non-coding downstream 1442579 6795749 ~ 6795994 (+)
AMCG00006459 NA other upstream 217741 5127357 ~ 5134715 (+)
AMCG00006460 wasl,wasla,LOC107698525 other upstream 245434 5094271 ~ 5107022 (+)
G109795 wasl,wasla,LOC105018628 other upstream 253758 5080881 ~ 5098698 (+)
G109781 NA other upstream 326550 5024895 ~ 5025906 (+)
AMCG00006445 NA other upstream 824718 4524806 ~ 4527738 (+)
G110023 NA other downstream 625892 5979062 ~ 5982909 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other downstream 1166695 6519865 ~ 6588399 (+)
G110163 LOC100846954 other downstream 1558706 6911876 ~ 6912254 (+)
G110279 NA other downstream 2300502 7653672 ~ 7655194 (+)
G110445 NA other downstream 2822590 8175760 ~ 8176786 (+)

Expression


Co-expression Network