G109875


Basic Information

Item Value
gene id G109875
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5345683 ~ 5347227 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU137574
TGGCAGTATAGGAACTGAAACGAACAGCATTGCAAGATGGGGCTtagtcaaatgttttttattgggCTGTACCCCATTAAATCGGCTGTATTTATGAGGGTATGATGTCATTTGTATCTTCAGACCAAAGGATCCTGCTTATATTTCTCTTGTAGGGAAAAGCACAAGTGTCCAACACACTGCCTGCCTAAACACTCAATAAACACAAGAGAGGCAGAGGTTTAATGACTTAACAATGTGAATTTAATGAGCGAATGAGCCAATACAAGTATCTGAAATGCATCTTAACAATGCAGtacacagcaattcaaaatcaTTCACTGAAACAATTCTGCGCctcatgaataaaacaacataactcttatgttatttttgtaacacgatttttgttttaaagctatAAAGTTTCACGCATAGATTTTAGAAATACAACATTTGACTGTGAGTTGCACTAATTAGTTTCTTATTTGGAAGATTCTGGTAAATTTTTTCAAGCCATGTATCGAAGAGCACCAAGATATCTGAACCCCGAAGCAAACCTTACAAACCCAGTTACTTTTACTTGTTGGAAGTATTTTGGGCCCAAAATTCCTTAGTGCAATGATCTGAGgttgatatatatttgttgtattcCAGCGGGAATAAAATCAGTGAAGAATTATAATTAAGgtaaaaacaacatgcaaactGTGTGCTTGAGGATGTAAAATTAGGTCAAAATACtttgaagtaaataaaatgtagatcaCTCTCTGTCCACcatagggctagaccaaatgaaaactcTGACCCACCAGCAAATCGCTGATTATGAAGTTGTAGTGTATCGTGTTTGgatttataaataatagaaagatgcttctaacaataaattaaactgcaatggGGTACAGATCTGTACTTTGCGATTCGTGGACAGGTCAAAGATTAGATCTAACCAGATTTCTCTGTTGAGGAGCAATTACATTTGATCACATTTTCCCTGTTCCTTGAATTATCCAAGGCATTTAAAAGGCTGTTTCGAATGCAATCCCAGTAAGAACTTCCCAATATTGAGACACCGGGGGGGGGcgaaatatattttcacagcatcatctaaacaaataaaaacaaaaacactgaatgcTCAGCCGGTCTCCCGGAAGACGCTTTCCGACTTCAAATGTAGTGTAAGTCTGTCAATAGCAGCACTCACTTGCGGGTTGTGAGCTAGTCTGAGAATGAGCTCTTTGCGTTGATCTGTATTCCCTCTGCCTGGATGCGCTTCAGCAGAGGTCCATAGATGTTCTTGGTTAGTGGGAGAACCAGTCCTTTTGTCTGAATTTCACCTGAAAGAAAATCCAAGGAGACGTATTAAATCTGGCGTCTGAAGCATAAACATGTAAACAGATTCAACactgcttcttcttttttgacTCCTTAAATAAAAATTTCCCAAAGGATTATGCATGATGTGAGGCTGCAGCGCCTGTTGTCAATTACTTTTCCACAATTTCACCGATATAAAATGGTTTCTGAC

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function
GO:0016298 lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU137574 True 1519 lncRNA 0.38 2 5345683 5347227

Neighbor

gene id symbol gene type direction distance location
AMCG00006462 NA coding downstream 222055 5115716 ~ 5123628 (-)
AMCG00006463 LOC107726005,LOC107656401,LOC107711505,LOC107581005 coding downstream 231593 5111162 ~ 5114090 (-)
AMCG00006456 LOC108436892 coding downstream 277943 5063461 ~ 5067740 (-)
AMCG00006457 NA coding downstream 294492 5017795 ~ 5051191 (-)
AMCG00006447 NA coding downstream 853153 4484214 ~ 4492530 (-)
AMCG00006470 NA coding upstream 2977 5350204 ~ 5390268 (-)
AMCG00006471 NA coding upstream 89316 5436543 ~ 5483801 (-)
AMCG00006473 NA coding upstream 163362 5510589 ~ 5513330 (-)
AMCG00006474 NA coding upstream 171444 5518671 ~ 5534047 (-)
AMCG00006472 NA coding upstream 203590 5550817 ~ 5551857 (-)
G109815 NA non-coding downstream 208939 5136518 ~ 5136744 (-)
G109782 NA non-coding downstream 325008 5020037 ~ 5020675 (-)
G109778 NA non-coding downstream 374495 4970864 ~ 4971188 (-)
G109761 NA non-coding downstream 598449 4746970 ~ 4747234 (-)
G109736 NA non-coding downstream 824314 4515937 ~ 4521369 (-)
G109878 NA non-coding upstream 62113 5409340 ~ 5409571 (-)
G109916 NA non-coding upstream 87710 5434937 ~ 5435764 (-)
G109995 NA non-coding upstream 455345 5802572 ~ 5803261 (-)
G109996 NA non-coding upstream 456271 5803498 ~ 5804452 (-)
G110015 NA non-coding upstream 506587 5853814 ~ 5855502 (-)
AMCG00006429 NA other downstream 1068528 4270416 ~ 4277155 (-)
AMCG00006415 NA other downstream 1168631 4168050 ~ 4177052 (-)
G109633 NA other downstream 1180083 4164934 ~ 4165600 (-)
AMCG00006414 NA other downstream 1187560 4152816 ~ 4158123 (-)
AMCG00006398 NA other downstream 1530166 3730042 ~ 3815517 (-)
AMCG00006476 NA other upstream 230243 5577470 ~ 5603733 (-)
AMCG00006491 NA other upstream 666877 6014104 ~ 6042924 (-)
G110140 NA other upstream 1438086 6785313 ~ 6785851 (-)
G110195 NA other upstream 1731162 7078389 ~ 7107138 (-)
G110507 NA other upstream 3375161 8722388 ~ 8724352 (-)

Expression


Co-expression Network