G109916


Basic Information

Item Value
gene id G109916
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5434937 ~ 5435764 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU137623
AAGCACTCGGATctttgctgtggttttattattattctacatCAAACCCTGCTGAATCAGGaaacagtaaaaatacattgttgagATTGGTGTGGTTTATGGTGTGGAGAGATACAGACTGGAACTCTATTGAAAAgaggaaaatgtgaaatacgTCTGCAGAGGGCACCAAATTATGAAGACTGGTCAAAAGAGCATTGGCCAAATACATGTTGCGGACACATGAGACAGTGATTGAAACGGTTCAGCTCTCGGGGTACAAGGATGTTTGAGAAGAAAAATGGGTGAATGTTTCAAAATGGAGTAACACCCCCAACCAAGGTGGAGGTCATTTTTAGATTTGGGATAATGTATTCACAGCTGACATGTTTGTGGTTATCTGATGAAACCGTAGTAGGGTTTGTAGAGCACAGACAtaacgcacacaaaaaaacccGTTCAGTTAGAGGTTACAGATGTTCATAGAAATGTTGCAGGAGAGCTTGGCGCTTTGGCATCTTTTGAGTTGTTGGTCAGGAATTTCCCCCGGTCAAAATGACACTTTACTGTGAACCCTGAAGTTGGAAGAGACTGTTAAAAGTGAATTCTCGCCTACTGTGCATCCAAGAAAAAAGATCACACTGAAGAAACTACTTCAGCATATTCACAAACACTCAAGGCACTTCCTTTGCCACTTCTTCTtgtataaatacaattcatCTCCATATTCTTTTGGATGCACAATACATGAGCAATACTGTGTCTTTCAACAGCTGTGTTGGGATTATATTTTAGAAAGTCAGAAAAACAGTAATACTGCTAAAATAACTActtaatataattgaaaac

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

RNA

RNA id representative length rna type GC content exon number start site end site
TU137623 True 828 lncRNA 0.39 1 5434937 5435764

Neighbor

gene id symbol gene type direction distance location
AMCG00006470 NA coding downstream 44669 5350204 ~ 5390268 (-)
AMCG00006462 NA coding downstream 311309 5115716 ~ 5123628 (-)
AMCG00006463 LOC107726005,LOC107656401,LOC107711505,LOC107581005 coding downstream 320847 5111162 ~ 5114090 (-)
AMCG00006456 LOC108436892 coding downstream 367197 5063461 ~ 5067740 (-)
AMCG00006457 NA coding downstream 383746 5017795 ~ 5051191 (-)
AMCG00006471 NA coding upstream 779 5436543 ~ 5483801 (-)
AMCG00006473 NA coding upstream 74825 5510589 ~ 5513330 (-)
AMCG00006474 NA coding upstream 82907 5518671 ~ 5534047 (-)
AMCG00006472 NA coding upstream 115053 5550817 ~ 5551857 (-)
AMCG00006477 NA coding upstream 217511 5653275 ~ 5657121 (-)
G109878 NA non-coding downstream 25366 5409340 ~ 5409571 (-)
G109875 NA non-coding downstream 87710 5345683 ~ 5347227 (-)
G109815 NA non-coding downstream 298193 5136518 ~ 5136744 (-)
G109782 NA non-coding downstream 414262 5020037 ~ 5020675 (-)
G109778 NA non-coding downstream 463749 4970864 ~ 4971188 (-)
G109995 NA non-coding upstream 366808 5802572 ~ 5803261 (-)
G109996 NA non-coding upstream 367734 5803498 ~ 5804452 (-)
G110015 NA non-coding upstream 418050 5853814 ~ 5855502 (-)
G110152 NA non-coding upstream 1384474 6820238 ~ 6820568 (-)
G110165 LOC100846954 non-coding upstream 1476112 6911876 ~ 6912252 (-)
AMCG00006429 NA other downstream 1157782 4270416 ~ 4277155 (-)
AMCG00006415 NA other downstream 1257885 4168050 ~ 4177052 (-)
G109633 NA other downstream 1269337 4164934 ~ 4165600 (-)
AMCG00006414 NA other downstream 1276814 4152816 ~ 4158123 (-)
AMCG00006398 NA other downstream 1619420 3730042 ~ 3815517 (-)
AMCG00006476 NA other upstream 141706 5577470 ~ 5603733 (-)
AMCG00006491 NA other upstream 578340 6014104 ~ 6042924 (-)
G110140 NA other upstream 1349549 6785313 ~ 6785851 (-)
G110195 NA other upstream 1642625 7078389 ~ 7107138 (-)
G110507 NA other upstream 3286624 8722388 ~ 8724352 (-)

Expression


Co-expression Network