G110023


Basic Information

Item Value
gene id G110023
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5979062 ~ 5982909 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU137762
CTTTTGATTTCTACACACAGTGAGCTGCACCGTATAGGTAAAGAGACATGATCATCTtttcacactttattttcaatcatttttaatCTCAGCTCTTCACTGATAGAGACACAAGTGTTAAGAAGACCTTGTTCAGAGAAATGCATCGCAGTGCAGCAATAGAAAACTCGAGAGCTTGAAAACTTAATAAACTCTTTCATTTGTACTCCGCAATCGTAACTCAACAAGAGCTGTAATCTTGTCAGCTGAGGttacattgttatatatattgcTGCACAACTACAACACAATACAACGGTGGGCACTTTGAGCAATTACTGTTCTCTGCTCAGAGGACCTGCAATAAATATTTCATCACAGGTGTGTGAATCATTTTTCGAGTCgaaaaacaaatcagtacaGGACACATTTCCACTCTGTATCTGGGATATTGAGGGTTCATGAAAGCAGTGTCAAACAGTTCTCACTGTAGGAAAAGAAATGCCgaaaataacttttcatttgtataattgatgcagtgattttcattttctttcattaaactCCCTTCCTTTaatgagattttctttattagCCTATTTACATAATTGTGCTCTACACTGCTCTGGAGTGCCGGTAGTCTAATGTTTGAACTACACAGAAATAATAAGTAGACAACAAGACAGAAGTGACAGGGAATTAGCGAGAACATGACACACCTGTGCAAAATCCTAAAAGCCTGGTTTAAAGCCAGGTTACTGAGGTAGTGAGGGGTTTATTGTCTGTTCACAAAAACCCAATAGTGAACACATTTTATAGCTTTTTCCTCACTGAAAGTATTTTAATAGGGAATTTTCTATTCCTTTATTTGATCAATAATTGTCTGTCAATGAGGCCACACAGTGGGGAAACAccacagtacaaaaaaaaagtgctcaattacttaattacccTACACCTGAGCTGGACAGTTGGATAACGATTCTGAAACTGAGCAGGGTTTATTGATACAGTAGTTCATTCATCTCAAAGCTGAATATCTCTGACTCGGGTTGGAGGTGGTAAGACACAGGGGAGATTCACTCTATATCTAAGCCTCTCTAATTCACCAATCACAGGACATCTGGAACACAGGGATAGTTAGACTAATTAAGACCCACgattggctcaattaagcagtAAATGCTCTGGATGAAACAGAAACCTGGCATCCCCGGGGCTCTGCAGGACGCGGGTCGGCCACACCTGATCGAACAGCATGAAACTcttcactgtgtctctgtgcccgTCGACATATTCCTTTGACTATTTAAACggatggggttgggggggggcaaCACATCAGAGCAGCTGTCAAACTGCGATCAGCGCCTCTCTGCAGATCCCAACATCCTCCTTCCCCCGGTGTCATTACCGCTCTGTTTGCAGGTCCAGGGGCACGGAGAGGTGTTTGCCTCAGAGGGGGTGAGGAAGGAGAGCAGCACCGTCTCCCAAGAGGTGAGACCCCGTTCGAGAGGGAGACCGATCAACGGCTGGCTGACTGACAGGGCTGCCTGTTAGCAGAGCTGTCAGAGGAGGCTCTAACGGGGGGGTGCTTCCAGTCCTCGAGTGCTGCAGGGGTGGCCGATTTTCTGTTCCACCTCAGGACCTAATTACTTGCTTGATGTCATTATTAGGATAAGAAGCCAAATTGACTGTTCTTTCCAGGTCTTAATTAGTTGCTCGTTGAAAGGTAGAAGCTGCAGTTGAGCAGTTTGATTGATAGATTATTGATTCAATGGTATGCACTGACCTAATTAATGTGCAAAATCCTTCAGATCCAGtcattaaaagacaaataaatcatgtgttcagttaagtgaataatgagctcaattaactaattaagagaATTGGAAACCAGAGGCACTCGCTAaacaggactggactggaaGAAAGGTGCATTACATACATAAAGGACTAAAGGTAagattgtaataataaatatccaGATTTAGatttactttgaaaacaaaacttctCATATTTTCAACGAACTTAATTGAATTTACAGGGCTATAGTGACACCAAGTGGCAGAATGGAATCACAACTTCTGTAGCACAATTGCATCCCAGTAATAATTAACTGCAGAAATAATATCAAATAAGATAAGGGCTTTAATTCTGCTAATTTAGGTGATCTAGCTCTCCAGGAAactatacagttttttttaaataacgcCTGGcagaaaaccataaaataatgtCACCCGAGTCATTTCAATTACTTAAATAGAAAAAGGCTCTCACACTTcaatttaatgttaataaattataaaaatcaaGAGTCTGCTTTGAGTCAACTACAGTAAAAATGTCTTATTTCCCAGCTGCAATAAAATTAGCatacatcaaatatatttttggtaacAAAAAACTGATTTACCGTTTCTATCTTTACAAGAGCAAgatttaaatatcaaatgttCTCCATATGTTAACTGTGCAaatcaataacaaatatttacaccaCCTGTAAAAGGTTTTCTGGACTTATTGAACCTTCCAAGACACAGATATCAcagaaaatgcaacattttgaaagggcAGAAAATTGACAAGGTCTCAAGTTATTGACAATCTGTGATTCTAACCAAACGATCCAATTCTCACATTAATTAAGCTACTTTAAACTTAACTATTTcacttttaagaaaaatatatatgccaCCTCTTATCTTATACAGCTTGGGCTGTAACAAACTTTGCATGAGAGTCTCCttgatatacatgtatacaaaaataagagcgtccatttatttaatcatgttcACCACATGAATCTCTGCACGTCACTGCTGTCAGGCCAGTGGAAAGTCTTATTTAAAAAGAGGTAAATAGTCACCGCGTTCACAGCCGTGTACAAACCCAACTCCAGGAGAAGCCGGCCGGCAGAAGGTACGGGAATATTGAGTCTGTAAATCAAATAGGGCAGGATGAAATATCGAAACTCCAGCAGCTTCTGAGGGACGGTGGCGGCCGCGAGACACACGCAGAACATCAGGTTCCAGAACACCGATTTAGACTTCAGCGTGTCTGTGAAACTCCACGCTGTGAACACGTAGCCCGGCACCAACAAATAGGGCACCAGTCTGTGTTTCTGGAAGATCTTCTTCCACACGTAGAAAGGATAGTGTCTGTTGTCTGCCAGCAGATACTTGTGCACGAAGGAAAACCTCCAAACCAGGAAGAGGGCCAGAGCAGTCAGACACAGGCAGAACACAGGGTTCTTTCTCAGCCAACGCAGGAAGTTCACCGTCTTCTGGtaggaaaatgaatggaaaatggAGAACACCAACGTGAAGGAGAGAAAGTAAAACAGCTGTGGGAAGTTCAAACAGCCTTCGTGGCTGCTCCGGTCTCCCACCACTATCCCGCCGTTCAGCAGCACGAACACAACAAAGCCGAGCACCACCGTGATGTAAGGCCACATGGAAGATACAACCGCCTTGACATGCTGGGGGCTCAATAAGTATTCCACCAGGAATCGCGCCAGCTTGGTCATCCCGGCCACGGAGCCCAGATGAGGCGCGGAAGACCCGTCATCCTTCTTCTTCGTCTGCTCGGCTCTCCAGCTCTCGTCCATCTTCTGGGCGATGACCGTGCCGGCGCAGAAGGCCACCCAGATGACGTTGGTCTGGCGGAACATGACGGCGCAGACGCCCAGCAGCGCGGAGGCTTTGTGGCTGCCGTAGAGACACATCAGGTAGGCGAAGAGAGTGAAGAAGGTGGAGCCGGCGTCCGTGTAGTAGAGGAATGTGAAGAAGTACAGCACCGGGAAGGAGGAGAGAGCCAGGGCCGAGAGCACTCTACGAGAGGCAGAGCTGGAC
>TU137766
CTTTAATTCTGCTAATTTAGGTGATCTAGCTCTCCAGGAAactatacagttttttttaaataacgcCTGGcagaaaaccataaaataatgtCACCCGAGTCATTTCAATTACTTAAATAGAAAAAGGCTCTCACACTTcaatttaatgttaataaattataaaaatcaaGAGTCTGCTTTGAGTCAACTACAGTAAAAATGTCTTATTTCCCAGCTGCAATAAAATTAGCatacatcaaatatatttttggtaacAAAAAACTGATTTACCGTTTCTATCTTTACAAGAGCAAgatttaaatatcaaatgttCTCCATATGTTAACTGTGCAaatcaataacaaatatttacaccaCCTGTAAAAGGTTTTCTGGACTTATTGAACCTTCCAAGACACAGATATCAcagaaaatgcaacattttgaaagggcAGAAAATTGACAAGGTCTCAAGTTATTGACAATCTGTGATTCTAACCAAACGATCCAATTCTCACATTAATTAAGCTACTTTAAACTTAACTATTTcacttttaagaaaaatatatatgccaCCTCTTATCTTATACAGCTTGGGCTGTAACAAACTTTGCATGAGAGTCTCCttgatatacatgtatacaaaaataagagcgtccatttatttaatcatgttcACCACATGAATCTCTGCACGTCACTGCTGTCAGGCCAGTGGAAAGTCTTATTTAAAAAGAGGTAAATAGTCACCGCGTTCACAGCCGTGTACAAACCCAACTCCAGGAGAAGCCGGCCGGCAGAAGGTACGGGAATATTGAGTCTGTAAATCAAATAGGGCAGGATGAAATATCGAAACTCCAGCAGCTTCTGAGGGACGGTGGCGGCCGCGAGACACACGCAGAACATCAGGTTCCAGAACACCGATTTAGACTTCAGCGTGTCTGTGAAACTCCACGCTGTGAACACGTAGCCCGGCACCAACAAATAGGGCACCAGTCTGTGTTTCTGGAAGATCTTCTTCCACACGTAGAAAGGATAGTGTCTGTTGTCTGCCAGCAGATACTTGTGCACGAAGGAAAACCTCCAAACCAGGAAGAGGGCCAGAGCAGTCAGACACAGGCAGAACACAGGGTTCTTTCTCAGCCAACGCAGGAAGTTCACCGTCTTCTGGtaggaaaatgaatggaaaatggAGAACACCAACGTGAAGGAGAGAAAGTAAAACAGCTGTGGGAAGTTCAAACAGCCTTCGTGGCTGCTCCGGTCTCCCACCACTATCCCGCCGTTCAGCAGCACGAACACAACAAAGCCGAGCACCACCGTGATGTAAGGCCACATGGAAGATACAACCGCCTTGACATGCTGGGGGCTCAATAAGTATTCCACCAGGAATCGCGCCAGCTTGGTCATCCCGGCCACGGAGCCCAGATGAGGCGCGGAAGACCCGTCATCCTTCTTCTTCGTCTGCTCGGCTCTCCAGCTCTCGTCCATCTTCTGGGCGATGACCGTGCCGGCGCAGAAGGCCACCCAGATGACGTTGGTCTGGCGGAACATGACGGCGCAGACGCCCAGCAGCGCGGAGGCTTTGTGGCTGCCGTAGAGACACATCAGGTAGGCGAAGAGAGTGAAGAAGGTGGAGCCGGCGTCCGTGTAGTAGAGGAATGTGAAGAAGTACAGCACCGGGAAGGAGGAGAGAGCCAGGGCCGAGAGCACTCTACGAGAGGCAGAGCTGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137762 True 3848 TUCP 0.43 1 5979062 5982909
TU137766 False 1714 TUCP 0.45 1 5981196 5982909

Neighbor

gene id symbol gene type direction distance location
AMCG00006483 cpne8,LOC108427072,LOC108279828,LOC101074159,LOC102297242 coding upstream 21012 5918930 ~ 5958050 (+)
AMCG00006485 NA coding upstream 124611 5808944 ~ 5854451 (+)
AMCG00006484 abcd2,LOC107566844,LOC107689723,LOC107689245,LOC105891163,LOC106609116,LOC106575983 coding upstream 180755 5783737 ~ 5798307 (+)
AMCG00006479 NA coding upstream 209416 5763354 ~ 5769646 (+)
AMCG00006480 slc2a13,LOC106609118,LOC106575984,LOC103369283 coding upstream 255019 5699617 ~ 5724043 (+)
AMCG00006487 NA coding downstream 1564 5984473 ~ 5985996 (+)
AMCG00006488 NA coding downstream 6580 5989489 ~ 5996070 (+)
AMCG00006489 trmu coding downstream 18212 6001121 ~ 6009470 (+)
AMCG00006495 gramd4 coding downstream 125686 6108595 ~ 6128500 (+)
AMCG00006494 gramd4 coding downstream 152598 6135507 ~ 6150798 (+)
G109978 NA non-coding upstream 174503 5799600 ~ 5804559 (+)
G109933 NA non-coding upstream 432626 5546207 ~ 5546436 (+)
G109837 NA non-coding upstream 625892 5352456 ~ 5353170 (+)
G109786 NA non-coding upstream 934429 5044416 ~ 5044633 (+)
G109780 NA non-coding upstream 956884 5021296 ~ 5022178 (+)
G110024 NA non-coding downstream 881 5983790 ~ 5984250 (+)
G110081 NA non-coding downstream 235622 6218531 ~ 6220086 (+)
G110147 NA non-coding downstream 812840 6795749 ~ 6795994 (+)
G110161 NA non-coding downstream 872971 6855880 ~ 6857998 (+)
G110167 NA non-coding downstream 954335 6937244 ~ 6937664 (+)
AMCG00006459 NA other upstream 844347 5127357 ~ 5134715 (+)
AMCG00006460 wasl,wasla,LOC107698525 other upstream 872040 5094271 ~ 5107022 (+)
G109795 wasl,wasla,LOC105018628 other upstream 880364 5080881 ~ 5098698 (+)
G109781 NA other upstream 953156 5024895 ~ 5025906 (+)
AMCG00006445 NA other upstream 1451324 4524806 ~ 4527738 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other downstream 536956 6519865 ~ 6588399 (+)
G110163 LOC100846954 other downstream 928967 6911876 ~ 6912254 (+)
G110279 NA other downstream 1670763 7653672 ~ 7655194 (+)
G110445 NA other downstream 2192851 8175760 ~ 8176786 (+)
AMCG00006552 NA other downstream 2727841 8710750 ~ 8724066 (+)

Expression


Co-expression Network