G110081


Basic Information

Item Value
gene id G110081
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6218531 ~ 6220086 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU137834
AATTGCCTTTACAATCGTCAATAAGGGGGTTGTGGGGTTAAAACAGAAGCAGCAGACCTTAGACATCCTAGTAAGCAGGTCTGACCTTGTGAACAGTTAATGGTGCCACACTTGTGTTTCTGCCAACTTCTAAACAAGATCAAACTGTTACTGTCTCACATCTAAATATTAAGACCATTGTACAATTCTTTTCACTTCAAAAGAACTTGTATCAATCATTTCTATGAAAAATGTTGTAATTATTGATGCATTTGCCTATAGGCCACTCTTAATTAGGTTGAGCTTTCTCTGCATCTGCCCAGATGTTCTGATTCAGCCCAATTAAGGATCCATATGAGAGATAAAAACTTGAATGTGCTGCTAAATTACGTTTGGATTtgacattataaaacaattaggAACAAACTGATCAATCACGATGCCTGCCAGGGAGATGGCTGCTCGTGGAGGCGGATCCCATCATTGTTAGCACAGCAATGGCTGCAGAGCTCCTGTGTCTCATATACCTGAATACAGCAGGGCTCAGCTCCACTCCTGCAGGGCCACAATTCAGCAATGTTTACAGGTCTCTCGACACCTCCAGCACATTAGGACGTGGAATAAAGGGGATAAATTGATAccattaagcaaataattagatttgttgcaagagctcaggtggaaagaaaagcacaagcCACTGTGGCCCCTCGGGACTGGAGTTGGGAACCCCTGCGATATAAACGATGGCTGTAGTTAGAgtagtgttttttaaaagaaaatacagtccTCAAGGGCCTGCAGTGCTTTCAGGTTTCTGTTCCACCTGAGCACTGCACTCACTCCCTAAGTTATTTAGTTAATGGCTTCACTGGACCAGTTTTCCAAGTTTTTTAAGgtttataagaaaaaaaacctataaCACAAGCTGTATTAGAATGGATTGctgccctccaggaccagagctgcTCAGCCCTGTTTGTCAGATCTGGGAATCGAGAGCCACATGGTCTTGTGGTTTTCTAACAAGAgctcttaattatataaatgatcTATTTTGTACTTCTCTTTTCTAATTTAACCCTTTCCCTTCCCCTCTAATTTACCCAACAATAGTATCCCATTGTTACAGAGAAACAATACCCAGTGCATGAGGCagcatgtttatgtttatacatacacacacacacacacacataaatacatatgaatttTAAAGTGAGAGCATGAAGGCACTGCTcaagaggcagttcagaggagagcaactaAACGTATTtgaggtttgaagggaatgtcctactgagagactgaggaactgaaccttttcaccctggatcagaggagactacgtggggacttgattcaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagaggcgtcacaatctgaacaaactccccagcgatgtggctgaagagacaatttgggaacattcaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137834 True 1556 lncRNA 0.42 1 6218531 6220086

Neighbor

gene id symbol gene type direction distance location
AMCG00006494 gramd4 coding upstream 67733 6135507 ~ 6150798 (+)
AMCG00006495 gramd4 coding upstream 90031 6108595 ~ 6128500 (+)
AMCG00006489 trmu coding upstream 209061 6001121 ~ 6009470 (+)
AMCG00006488 NA coding upstream 222461 5989489 ~ 5996070 (+)
AMCG00006487 NA coding upstream 232535 5984473 ~ 5985996 (+)
AMCG00006497 NA coding downstream 2731 6222817 ~ 6234153 (+)
AMCG00006499 tbc1d22a coding downstream 34902 6254988 ~ 6267136 (+)
AMCG00006500 tbc1d22a coding downstream 67648 6287734 ~ 6334843 (+)
AMCG00006504 NA coding downstream 557885 6777971 ~ 6783364 (+)
AMCG00006505 NA coding downstream 566768 6786854 ~ 6793168 (+)
G110024 NA non-coding upstream 234281 5983790 ~ 5984250 (+)
G109978 NA non-coding upstream 413972 5799600 ~ 5804559 (+)
G109933 NA non-coding upstream 672095 5546207 ~ 5546436 (+)
G109837 NA non-coding upstream 865361 5352456 ~ 5353170 (+)
G109786 NA non-coding upstream 1173898 5044416 ~ 5044633 (+)
G110147 NA non-coding downstream 575663 6795749 ~ 6795994 (+)
G110161 NA non-coding downstream 635794 6855880 ~ 6857998 (+)
G110167 NA non-coding downstream 717158 6937244 ~ 6937664 (+)
G110201 NA non-coding downstream 923181 7143267 ~ 7143659 (+)
G110240 NA non-coding downstream 1020000 7240086 ~ 7240557 (+)
G110023 NA other upstream 235622 5979062 ~ 5982909 (+)
AMCG00006459 NA other upstream 1083816 5127357 ~ 5134715 (+)
AMCG00006460 wasl,wasla,LOC107698525 other upstream 1111509 5094271 ~ 5107022 (+)
G109795 wasl,wasla,LOC105018628 other upstream 1119833 5080881 ~ 5098698 (+)
G109781 NA other upstream 1192625 5024895 ~ 5025906 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other downstream 299779 6519865 ~ 6588399 (+)
G110163 LOC100846954 other downstream 691790 6911876 ~ 6912254 (+)
G110279 NA other downstream 1433586 7653672 ~ 7655194 (+)
G110445 NA other downstream 1955674 8175760 ~ 8176786 (+)
AMCG00006552 NA other downstream 2490664 8710750 ~ 8724066 (+)

Expression


Co-expression Network