XLOC_000060 (tuba8l2)


Basic Information

Item Value
gene id XLOC_000060
gene name tuba8l2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5402476 ~ 5419116 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000116
TACTGTCCTCCATAAGCGTGGGCTGTGAGTGCTGCAGTGAGTGTGTTGCTCCTCCTCTGAGCTGCTGCTGTAGGTATAAAGTCAAGCTGCTATCAGCGAGTCTGTCAGACTGTCTCACTCATACCACATTACAGGTACGCAGTGAGAGGGCACGAACTCTTCTTAATACCTTCCCGGCAAAAAACAAATCCAACTCCAAAGCAAAATGCGTGAGTGTATCTCTGTGCATGTGGGGCAGGCTGGCGTCCAGATGGGCAACACCTGCTGGGAGCTCTACTGTCTGGAGCACGGCATCCAGCCGGACGGGCAGATGCCCAGCCACAAACCAGTGGGAGGACATGACGACTCCTTCACCACCTTCTTCAGTGAGACAGGAGCTGGCAAATATGTACCCCGGGCAATATTTGTAGACCTGGAGCCGACAGTCATTGATGAGGTCCGCACAGGCACTTACCGCCAGCTGTTTCACCCCGAGCAGCTCATCTCAGGAAAGGAGGATGCAGCAAATAACTACGCCCGCGGGCACTACACCATCGGCAAGGAGATCATTGACTCTGTGCTCGACCGCATTCGCAAACTGGCTGACCAATGCACAGGACTGCAAGGTTTCCTGGTCTTCCACAGTTTCGGTGGAGGCACGGGCTCAGGTTTCACCTCTCTTCTGATGGAGCGTCTCTCGGTCGACTTCGGGAAGAAGTCCAAGCTTGAGTTTGCCATTTACCCAGCTCCACAGGTGTCTACGGCTGTGGTGGAGCCGTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCCGACTGTGCCTTCATGGTGGACAACGAGGCCATTTATGACATCTGCAGGAGAAACCTGGATATCGAGCGCCCGTCCTACACCAACCTCAACCGGCTCATCAGTCAGATCGTGTCCTCCATCACCGCCTCTCTGCGCTTCGATGGCGCTTTAAACGTCGACCTGACGGAGTTCCAGACCAATTTAGTGCCCTACCCTCGCATCCACTTTCCTCTGGCCACATACGCTCCAGTCATCTCTGCTGAGAAAGCCTACCACGAGCAGCTCTCAGTGGCGGAGATCACCAACTCCTGCTTCGAGCCCAGCAACCAGATGGTGAAGTGCGACCCACGGCATGGGAAATACATGGCTTGCTGTTTGCTCTACAGGGGAGACGTGGTGCCGAAAGACGTCAACGTGGCCATCGCCGCCATCAAGACCAAGAGAAGCATCCAATTCGTGGACTGGTGTCCCACTGGATTCAAAGTGGGCATCAATTATCAGCCCCCGACTGTGGTTCCCGGTGGAGATCTGGCTAAAGTGCAAAGAGCCGTTTGCATGCTGAGCAACACCACTGCCATCGCTGAAGCTTGGGCTCGTCTGGACCACAAATTCGACCTGATGTACGCCAAGAGAGCCTTCGTGCACTGGTACGTGGGCGAGGGGATGGAGGAAGGCGAATTCTCTGAGGCTCGAGAAGATATGGCAGCTCTGGAGAAGGACTACGAAGAAGTGGGCATTGATTCGTTTGAGGAAGACGAGGAGGGGGAAGAGTTctaaaagagaaaagtgtttgtttgtttttctaccaaaaactaaataaagtaaaGCTTTAAATTGT
>TCONS_00000117
GAGCTGCTGCTGTAGGTATAAAGTCAAGCTGCTATCAGCGAGTCTGTCAGACTGTCTCACTCATACCACATTACAGGTACGCAGTGAGAGGGCACGAACTCTTCTTAATACCTTCCCGGCAAAAAACAAATCCAACTCCAAAGCAAAATGCGTGAGTGTATCTCTGTGCATGTGGGGCAGGCTGGCGTCCAGATGGGCAACACCTGCTGGGAGCTCTACTGTCTGGAGCACGGCATCCAGCCGGACGGGCAGATGCCCAGCCACAAACCAGTGGGAGGACATGACGACTCCTTCACCACCTTCTTCAGTGAGACAGGAGCTGGCAAATATGTACCCCGGGCAATATTTGTAGACCTGGAGCCGACAGTCATTGATGAGGTCCGCACAGGCACTTACCGCCAGCTGTTTCACCCCGAGCAGCTCATCTCAGGAAAGGAGGATGCAGCAAATAACTACGCCCGCGGGCACTACACCATCGGCAAGGAGATCATTGACTCTGTGCTCGACCGCATTCGCAAACTGGCTGACCAATGCACAGGACTGCAAGGTTTCCTGGTCTTCCACAGTTTCGGTGGAGGCACGGGCTCAGGTGTCTACGGCTGTGGTGGAGCCGTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCCGACTGTGCCTTCATGGTGGACAACGAGGCCATTTATGACATCTGCAGGAGAAACCTGGATATCGAGCGCCCGTCCTACACCAACCTCAACCGGCTCATCAGTCAGATCGTGTCCTCCATCACCGCCTCTCTGCGCTTCGATGGCGCTTTAAACGTCGACCTGACGGAGTTCCAGACCAATTTAGTGCCCTACCCTCGCATCCACTTTC

Function

symbol description
tuba8l2 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in gill. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 22. Orthologous to human TUBA4A (tubulin alpha 4a).

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1646 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in gill. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 22. Orthologous to human TUBA4A (tubulin alpha 4a).

Ensembl:

ensembl_id ENSDARG00000031164

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000116 False 1616 mRNA 0.54 4 5402476 5419116
TCONS_00000117 True 863 processed_transcript 0.55 5 5402534 5418507

Neighbor

gene id symbol gene type direction distance location
XLOC_000059 NA coding upstream 88881 5311479 ~ 5313595 (+)
XLOC_000058 spry2 coding upstream 124893 5273481 ~ 5277583 (+)
XLOC_000057 NA coding upstream 372321 4901460 ~ 5030155 (+)
XLOC_000056 FO744838.1 coding upstream 721999 4598060 ~ 4680477 (+)
XLOC_000055 slitrk6 coding upstream 1248144 4101741 ~ 4154332 (+)
XLOC_000061 stk16 coding downstream 3323 5422439 ~ 5434261 (+)
XLOC_000062 atic coding downstream 18274 5437390 ~ 5504130 (+)
XLOC_000063 cpo coding downstream 157035 5576151 ~ 5587575 (+)
XLOC_000064 NA coding downstream 287854 5706970 ~ 5728684 (+)
XLOC_000065 NA coding downstream 375897 5795013 ~ 5799092 (+)
XLOC_000054 CABZ01063288.1 non-coding upstream 1642442 3759924 ~ 3760034 (+)
XLOC_000053 NA non-coding upstream 1681873 3718666 ~ 3720603 (+)
XLOC_000072 NA non-coding downstream 960762 6379878 ~ 6554470 (+)
XLOC_000073 NA non-coding downstream 979094 6398210 ~ 6403223 (+)
XLOC_000076 NA non-coding downstream 1245917 6665033 ~ 6668339 (+)

Expression


Co-expression Network