G110369 (psmc2)


Basic Information

Item Value
gene id G110369
gene name psmc2
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7907558 ~ 7909228 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU138203
TTAGAAACCCATGTGTCTTACCTGCATCATCGTGACAGTGGGGTCAATCTTTGGGGGAAGTGGAATATGAATCTGGTACTTGTTTCGGTCAACACTGaaagataaacaaacatgtaaatcTGAAAAAGAGATTCAGGTAGACCTATAACACACAAttctaaatattaaaacatttttcacagtttttgaaAACTATTAAGCTCAAAAGGCACATTATTAGTGTTTATATGTAAAATCCAAAGCAAAAAGCAGGTTTATTCAGCCCCATCcagcatgaaaataaagtattggATCCATCTATCCCTATGGATAGTACGGCGAGTTCTTACCCCACTCTCATTCCTTCCTCAATGTCAGTAGGGGCGACCTGGTCACTCAGGTCCACCACAAACTTGGCAAACTGCTTCACATTGATGATGTACTTGGGATCCTCCGAGTCGGCGTTGATAATCTTGGTGCATCTGGCCACTTGTAAAGGCTGTTCACTCTGCAGGGTCTGCTTGTCTGCTGCCAGATCCCAAAGCGCCGGGGGTGCCAGGCCGGTGTCGGACTCCTTGatgcCCGTCAGCTCGTTGATTTTCTTAAGCAGTTGTTGAATATCATCCTCCACTTGCTTGATCTGTCTCGAGTATGTGCTCTGGCCATAAGTCTTCAAGAGAGCAATATCGCCTTCATCCAAAGCTCTTATGGTTTTATcctccttttcctcctccttgACTTTGCGCTGCTCGGATCCCAAATAATCTGGCATTTTCgccctgtaaataaatatttcacgCTGGTTGTTTAACTCCGATCCTGCCCGACCGACCAGGATTACACAGCAGGTTTACTCTCTTCCGCTTTTCCCGGCAGCCTCTGCGACGGCGACCGGAAACGAGAACCCG

Function

symbol description
psmc2 Predicted to enable TBP-class protein binding activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome regulatory particle, base subcomplex. Predicted to be active in dendritic spine. Orthologous to human PSMC2 (proteasome 26S subunit, ATPase 2).

NR:

description
PREDICTED: 26S protease regulatory subunit 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138203 True 887 lncRNA 0.46 5 7907558 7909228

Neighbor

gene id symbol gene type direction distance location
AMCG00006537 dnajc2 coding downstream 1358 7901616 ~ 7906200 (-)
AMCG00006536 NA coding downstream 20449 7880134 ~ 7887109 (-)
AMCG00006527 NA coding downstream 59029 7829952 ~ 7848529 (-)
AMCG00006526 NA coding downstream 106511 7784020 ~ 7801047 (-)
AMCG00006523 NA coding downstream 188735 7694540 ~ 7718823 (-)
AMCG00006538 NA coding upstream 4195 7913423 ~ 7925635 (-)
AMCG00006542 klhdc10,LOC107587165,LOC107729855,LOC107690572 coding upstream 72856 7982084 ~ 7993911 (-)
AMCG00006541 nrf1,LOC107584621,LOC107690626 coding upstream 155848 8065076 ~ 8087619 (-)
AMCG00006544 NA coding upstream 178809 8088037 ~ 8090151 (-)
AMCG00006543 strip2 coding upstream 181456 8090684 ~ 8120577 (-)
G110309 NA non-coding downstream 150706 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 339399 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 339991 7567204 ~ 7567567 (-)
G110269 magi2 non-coding downstream 349090 7558205 ~ 7558468 (-)
G110267 NA non-coding downstream 356451 7550859 ~ 7551107 (-)
G110576 NA non-coding upstream 1100912 9010140 ~ 9014326 (-)
G110594 NA non-coding upstream 1567254 9476482 ~ 9477506 (-)
G110720 NA non-coding upstream 2395703 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 2512333 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 2693867 10603095 ~ 10603733 (-)
G110195 NA other downstream 800420 7078389 ~ 7107138 (-)
G110140 NA other downstream 1121707 6785313 ~ 6785851 (-)
AMCG00006491 NA other downstream 1864634 6014104 ~ 6042924 (-)
AMCG00006476 NA other downstream 2303825 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 3630403 4270416 ~ 4277155 (-)
G110507 NA other upstream 813160 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 874677 8783905 ~ 8794062 (-)
G110570 LOC106576073 other upstream 1088409 8997637 ~ 8999264 (-)
G110605 NA other upstream 1636267 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 2178047 10087275 ~ 10107285 (-)

Expression


Co-expression Network