G110520 (bmt2)


Basic Information

Item Value
gene id G110520
gene name bmt2
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8783905 ~ 8794062 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU138400
NNNGCACCATAACAAGGATGATCGCTTGGGTTTACCGTTATCCTCCATATGCTTTAACGGGACTGATGCAAATATCAGACTTCTAACTGACGGTTCTGGGGAGATTGAAAAATGAGCAACAAATCTGGGAAACCCTACTGAAATCCATTATGTTTAAAGGCTTTGTGGACATCCACATTTCAGCAAGGTTTCAAAAGAAAGCAGTCTGTAAGGCTTTTACTCtgccctctcctctctccctcttgatTCAGATTTTATTCTACTTTTGTGAGACTGCTTTACAAtccatcaatacatttttattacaagtAAATCCATGACTCCCTCAGATATTGTGCCATTGAATTTACTTTCatgaagttaaattaaatgtgtagtttCCATACAGCAAGCCATCTAAAATGGCAGTTAAAAAAAGCCTGACAGTCAGTTCAATGCACTGGAGAGAGATTCTTTTTccactggatttatttttaaccatgaGTAATTCACCTTCTCCTTTAAGTAACTGAAATGAGAAAGTCAAaggaaaataggaaaaacaaattaaagtagATTCTTACACTCCTGTGTCTTCCAGCAGATCTGAAGCCTTCAATGCAAAGAACCTGACATCTAGTCCTGTAAAGTATCATACAGCAAGGCTTCAACTGAACTACACACAATGTaaagaaactttttttttttttttttttttttttttt
>TU138401
NNNGCACCATAACAAGGATGATCGCTTGGGTTTACCGTTATCCTCCATATGCTTTAACGGGACTGATGCAAATATCAGACTTCTAACTGACGGTTCTGGGGAGATTGAAAAATGAGCAACAAATCTGGGAAACCCTACTGAAATCCATTATGTTTAAAGGCTTTGTGGACATCCACATTTCAGCAAGGTTTCAAAAGAAAGCAGTCTGTAAGGCTTTTACTCtgccctctcctctctccctcttgatTCAGATTTTATTCTACTTTTGTGAGACTGCTTTACAAtccatcaatacatttttattacaagtAAATCCATGACTCCCTCAGATATTGTGCCATTGAATTTACTTTCatgaagttaaattaaatgtgtagtttCCATACAGCAAGCCATCTAAAATGGCAGTTAAAAAAAGCCTGACAGTCAGTTCAATGCACTGGAGAGAGATTCTTTTTccactggatttatttttaaccatgaGTAATTCACCTTCTCCTTTAAGTAACTGAAATGAGAAAGTCAAaggaaaataggaaaaacaaattaaagtagATTCTTACACTCCTGTGTCTTCCAGCAGATCTGAAGCCTTCAATGCAAAGAACCTGACATCTAGTCCTGTAAAGTATCATACAGCAAGGCTTCAACTGAACTACACACAATGTaaagaaactttttttatttttattttttttttttacataggtttggaaaaataaaaaagtagtgGAACTTATGAAGCATACATATTGGCAAATGtatgtcaaaaagcaaaaactgaGCAATACAACTGAAACCAAACAGTATAAGTAGCGGTGAGAAGAATGCTAAACCTACTCAGGAAAGGGAAATAGACCTCCAATATTAAGCTAAATGGGTTACATGTAAAGGCAATTAGCATTACAACTAGGACTAGTATGCTCTTTAAGATCTTTGTAGTTTCAGATTCAATTTAGCATTTTTATGTCAATTTATGATTCATGTGTGATGATTCTCCTTGGGGAAGATCTCACTGAGATTCACTTCTTTATTTGGCAAGTTTTTTTCAGCTTCAAGCTGTTGGCTTCAAACCACACAGAACttgaacagaaaacacaatctgGGGACAAAAAGGGAAGCGATTTGTCTGAAAAGGCACCCCGATCCACGGCCTCATTAATAATGAAGGACAATTGGCTTGATGATCTCAATCTCAGTGAGTATTTTTTACTGCATCTTGCAGCCATTTCCTTATTTGGCCGTACCTACTGGTTACCCAATACAAGTACTAATATTGTTATATTCATAGGTTTTGGCACCCTCCgggataaaaacaacaaatcagatAAAGTGCCACAAATTAACACTATACAGAAGGTTCGTCAACCTGAAGAAATATAATTCATAAAGAAGTGCAACATGTTATCAGCTAGTTTGCTAGTGTTATtaagaacaataacaacattTCTCCACAATATTGTATACAGTACTTCTTTTAGGTCACACCAAGCTATTGCAGAAATGCACTCAAAGCAAAAAAGTAGCTATGACTGAGACCAGAGAGGGTATTAGTGCAAAACCTCATTATGaggtaaattattttaaagaagtaCGAGACACTGACAGCTCAACACAAAGGCATTTGGAAAAATGTCTTTCGTGTCAAATAACTTTTGGCTGATGAAAGGAACAGCTGCTTGAAACTGTAAGCAGTTTTGGATTTGAAGTATTTCCTGGAGTGGAGATTTTATTAAAGATATTGATATTCTCCCAGGAATTTATAATCAGTTTTGGTAGGTTGCCCCTCATTCCATATTCAAAATGGCAGCACgttaaaaactgaaacactgGATCCTGaaaaaatgacatgttttatGATCAAACAGGCTTTCAATGAATTATGCCAACTGGCCAGTACCTACACATTTgataaacatataaaacatacaaaagccTGGAACAGAGATGAATCGCAGTCTAAATGGTTCGCATTACAAgtaccaagtaattacagtcTATGGTTatcaaagaaaacattgttcTTTTTCACAGATTCACAACAATAAAATTCAAAAATCATATGCATATCGGCAAAGTGCTGGAGAAGCTTAAAATGTTACAGACATCAATTTGTTTAAGAGGTTCCCAGTGTCAGCAGCCAAAAGATGCTAGGTTAAAATGGTATTGTTGCCTTAAAAAACGGCCAACACCAGTTTGTTCAAAAGTGAACAGAACACATTGTTCGTCAAGAAAATTTAACAAAGAGCTCTATCAGACTAAATGCACAATTACACAAAGAAGTGGGTGCAAATTACAGCCTAACTCTAGGCAGTCAGCAAAAACTTCCTCAAGAAGTTTCTCTCCTCACACCTAACACCTTATTCCCCGCCCGACAAACGTGAGGCCAACATGAAAGAGTCTGACGTGTGTGTCCTCAGGTTGGTTCAGTATTTGGCTTTTAAATGTTAGATGAACTAATCTGCCTCCTggatacaaaacaaatgactgCATCACGAGCGTGAAGCATTCTTCAATGTTATATGAATTATTCCGATGGTCCACCGTGACGAATGAAAAGATAGAATGAACATGAAGGATGAGACCCATTATCCATCCTGAAGGCATTCAATGGTCaatccttttcatttaaaaaagccCCCATACAGATATATTGTTAATTTCATATCAGACGTAGAAAAAACAACCCACTTCTgtacttcttctttttttcctgtgcaaactgcattttttttttgttacacacAGAGCATTGAAATACAGCAGAATTATTTTGGCAACACAGCAGCTCAGACAATAAaaggcattttttaattaatccccCCCCGCCCCATCTTTGCTCTAAGTGTCCGGTCCATTAGCTCTGCAGTAAAATGGGGTCTTCCATCTCGTGGAACATTCCGGAGCTGGCTTGGCTCTCGCCGGAGTCCGAGTCATAAAGTGCTTCAGGGAGCTCCATGAACCCGCAGGCGATCTGGTCCTCGTCCGGCTCGGATCGGATCTGCACTGGCACGTCGGCGTACTCCTCCTCCTCGGCGTTGTTGAAGTCCTGCGGGATGTACAGCATCTCGGGGTAGTTCCTGCTCACGAGGTCGCTGGTGGTGTTCAGGGAGACCTTACGGAAGGCGATGAGATGCATGTGGGAGAACTTCACGTACTTGTACCTCTTGAAGCCCAGCGACTCCACGGCCACCTTCCAGCTCTTCATCATCGCGGCGTGCCGGTTCTGGTGGGAGGAGTCGGGCGTGATGATGAGGAGCAGTCCATTCAGAGCCAGGAGTTCGTGGGCTTTCTTGCAGCAGATCCAGCGCTGATACGGCGAGGGGAAGTAGGAGAGGAGGAGCGAGAACACCACCACGTTGAAGAGCTCTCCGGGCAGGGCGTCGATGGGGTTGCGGAGCTGCTTCAGGAAGGCATCCACAGCATCTCGCGCCAGCTGGAGaggctgctgcagctgcagGTTCAACAAGAC

Function

symbol description
bmt2 Predicted to enable S-adenosyl-L-methionine binding activity. Predicted to be involved in cellular response to amino acid starvation and negative regulation of TORC1 signaling. Predicted to act upstream of or within methylation. Is expressed in female organism. Orthologous to human BMT2 (base methyltransferase of 25S rRNA 2 homolog).

NR:

description
PREDICTED: probable methyltransferase BTM2 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138400 False 704 lncRNA 0.36 2 8783905 8794062
TU138401 True 3472 TUCP 0.41 2 8787818 8794062

Neighbor

gene id symbol gene type direction distance location
AMCG00006550 foxp2 coding downstream 271283 8477343 ~ 8512622 (-)
AMCG00006549 mdfic,si:ch211-262n1.4,LOC107656347,LOC107658868,LOC107584008 coding downstream 359307 8419388 ~ 8424598 (-)
AMCG00006547 tmem209,LOC102778061 coding downstream 600351 8174241 ~ 8183554 (-)
AMCG00006548 NA coding downstream 614514 8169002 ~ 8169391 (-)
AMCG00006545 LOC107725924,LOC107658882,LOC107583963,LOC107656398,LOC103371314 coding downstream 646694 8128879 ~ 8137211 (-)
AMCG00006553 NA coding upstream 57681 8851743 ~ 8856674 (-)
AMCG00006554 NA coding upstream 64283 8858345 ~ 8869522 (-)
AMCG00006559 LOC102797044,LOC102787037 coding upstream 93629 8887691 ~ 8912003 (-)
AMCG00006562 LOC105007066,LOC106576072,LOC106609221 coding upstream 401374 9195436 ~ 9197467 (-)
AMCG00006571 dnm1l,LOC107716704,LOC106561645 coding upstream 777427 9571489 ~ 9587506 (-)
G110369 psmc2 non-coding downstream 874677 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 1027053 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 1215746 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 1216338 7567204 ~ 7567567 (-)
G110269 magi2 non-coding downstream 1225437 7558205 ~ 7558468 (-)
G110576 NA non-coding upstream 216078 9010140 ~ 9014326 (-)
G110594 NA non-coding upstream 682420 9476482 ~ 9477506 (-)
G110720 NA non-coding upstream 1510869 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 1627499 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 1809033 10603095 ~ 10603733 (-)
G110507 NA other downstream 59553 8722388 ~ 8724352 (-)
G110195 NA other downstream 1676767 7078389 ~ 7107138 (-)
G110140 NA other downstream 1998054 6785313 ~ 6785851 (-)
AMCG00006491 NA other downstream 2740981 6014104 ~ 6042924 (-)
AMCG00006476 NA other downstream 3180172 5577470 ~ 5603733 (-)
G110570 LOC106576073 other upstream 203575 8997637 ~ 8999264 (-)
G110605 NA other upstream 751433 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 1293213 10087275 ~ 10107285 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 3223807 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 3255432 12049494 ~ 12069660 (-)

Expression


Co-expression Network