G110558


Basic Information

Item Value
gene id G110558
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8887686 ~ 8888492 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU138446
ttggatTCATATTTACAGATTTTATTGATACATTAATCAGAGGGTTTCAAGTTCTCAAGGCAGTGTAATAAAGATTCGGAGAGGATAGAATACAGAGACCATGATATTtaagcatttacaaaaaaaagtaataaaatatttgggGACACTTCTTTTAAATACTTGTGAAACAGCATTTATAGTTCCCAGTTAATCAGGTTCCATCCCAATGTGGGTGCCAAATGTATTCATCacggacacacagacaaacaacagAACACACTGCTCTTTACTCTAGCTTGTGCTGTTCTTCCCTTTGAGCAACTGTTTCAGTACACTTGTCTGCTTAAGAGCTTTCAGGTTTGAAATGTCTTCAGCAATTACAGGGACGTCTCTGCCATCTCCAGCGCCTTCCGATTCGTTCTCGCTGTCAGACAGGGCGCAGAGGAAGGCGTCGTTCTCATAGGTCGGGAAATAATACCTCAAAATGGGGTTGATCCCACTTGGACATCTCTGGCAGTGCCATGACATGCTTTGCCTCCGTCAGATGCAGCAGAACTTCGGCCTTAGAGCTGAACTTCTGTTGGCACCCATAGCATCGGCACTGGTGGATCTCCCGTCGGATGAAATTCACCAACTTCACCTGCTGGTAAAACCTCAGACCTGTAACCCAGACAAAGGCAGATTGACAGAGTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138446 True 678 lncRNA 0.44 2 8887686 8888492

Neighbor

gene id symbol gene type direction distance location
AMCG00006557 NA coding upstream 2091 8874473 ~ 8885595 (+)
AMCG00006555 NA coding upstream 79827 8799742 ~ 8807859 (+)
AMCG00006556 bmt2 coding upstream 93627 8746594 ~ 8794059 (+)
AMCG00006558 gpr85,LOC106576049 coding upstream 159360 8727643 ~ 8728326 (+)
AMCG00006551 NA coding upstream 227393 8644242 ~ 8660293 (+)
AMCG00006561 dock4,LOC106609220 coding downstream 23788 8912280 ~ 9009240 (+)
AMCG00006560 NA coding downstream 147979 9036471 ~ 9059363 (+)
AMCG00006566 NA coding downstream 586308 9474800 ~ 9476828 (+)
AMCG00006563 bpgm coding downstream 591011 9479503 ~ 9484141 (+)
AMCG00006564 NA coding downstream 641741 9530233 ~ 9560060 (+)
G110523 NA non-coding upstream 92355 8795060 ~ 8795331 (+)
G110447 NA non-coding upstream 707998 8179441 ~ 8179688 (+)
G110446 NA non-coding upstream 708958 8178521 ~ 8178728 (+)
G110444 NA non-coding upstream 712113 8173328 ~ 8175573 (+)
G110439 ahcyl2,LOC102228098,LOC105933830,LOC106941354,LOC103156365 non-coding upstream 752194 8133095 ~ 8135492 (+)
G110590 NA non-coding downstream 568173 9456665 ~ 9456911 (+)
G110681 NA non-coding downstream 1141934 10030426 ~ 10031846 (+)
G110722 NA non-coding downstream 1481223 10369715 ~ 10369931 (+)
G110849 NA non-coding downstream 2231898 11120390 ~ 11120735 (+)
G110883 NA non-coding downstream 2461392 11349884 ~ 11350117 (+)
AMCG00006552 NA other upstream 163620 8710750 ~ 8724066 (+)
G110445 NA other upstream 710900 8175760 ~ 8176786 (+)
G110279 NA other upstream 1232492 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 1975432 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 2299287 6519865 ~ 6588399 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 675460 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 3257253 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 3731570 12620062 ~ 12651815 (+)
G111197 NA other downstream 4122692 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 5045174 13933666 ~ 13939475 (+)

Expression


Co-expression Network