G110576


Basic Information

Item Value
gene id G110576
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 9010140 ~ 9014326 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU138472
AGgggttaattttatttttgtttcgtTCTTTAAAGTCAGGTTTTTCTGtccaattaaacattttttcaaagACAATTCTGTGcatcaaaaaacataaaaattaaaacacgtACATATATTCCTACAGTGTGCAGtcaccaaaaataaacatgtcttttAGTGGTAAAGTAACACTGACCGAAACTATGCGTAACACTATTTGTACAACAGCTTCTACAGCCAATGAAAAGAAATCGATTTTCTACAATCGCAATATAGTGCCATCATATCAAACTGATACCAtctctaataaaataaaaaatccttttaaaaagatttttttatttatgcaaagaatacaataatgaaatattattttatgtaaaaccTTTCCTTGtccaaaacctttttaaatggGGTTGTTACTTATGTAAACACGTCAGGTGCAGTTAAAATGTTCCTTTGAATTCTCTACACTTACTagaacatataaatatttaacatttataattataatttgttctTGCAACATTCAAAGCTGTAAATTCAATATGgctacattttgttaaaaacacattatgtaCAAGAATTGTAATACATAAAGTATTTGGCATACTTACAACAATCTCATTATGTAATTTACAATTTCACAAGAACTgattcatgtaaatatttaatcccCATTTgacaaaaaagaagagaaaagaaaaactaaacccATACAAAAAGTGAAACATATAAAGAATGCTGTagttaatattgaaaaaaactggTCACTTTGAGTTAAGCAATCAATATACACAGTccattgaaatattaaaaaagtttGCACACAATAAAATGCTTTCCAACCACGACTTCTTGGGTCCCCACTATGCatatactgtaaaacaaattcaattacaGTATATTCTGTCAGCAATATTTCTTTCAGtccaaaaaatatgaaaaatagtttgaaaaatgtactgtacaaaCATGTAGCTAAACATTGCTTTACGTAAAAGGTCGACAAAAGCTCTGCAAATCGAGTGTTTGAGTCTTAAGGAATACAAGCCCCGTCTGAAGGGGGCTTTGGCAGCCTAGGAGGATTTTAACTACTGAAAAAGAGTACATTTCTTCATAAttcatatttgcaaatatgaaGTTGTTATTTCAAAGAGACTGCTCCACCGGAGAGTTAATTGTTAAGTAGCTATCCTGTTAAAACACCGCATGTGGTTAACTGTAATACCCATTTGTGCTTCGTCTAAATTACCTCAGTTCAGGACTACAGTACTTATATTGCTTTATACAGGCCTCATGCAATCAGAAAGCCAATGTTTTAAGTTTGCTTTTACATacacaaaatggaaaagcacaTCTCACTGAGCACAGTAAAAGTTAAATTGTACTTCAGTCGAACACTTGCAAATACTAGAGTCTAACGTTCCAGTtcacagaaaagcagaaatgttcCTTTGGCACAATACTTGGAAAACCCCACAGAGCTAATGTATAGCTAATTTTCAGGCAAGAGGATTCTTAGATACTATGCTATactgaaaaacataagaaactCCTAGCACCTTTTAGCTGTCTATTAAACTGTGACTTAACTGTGTTTCCAGTGATTTGCAGGACTTGCTGCAACaaagaaagaagaggaaaaaagaaacctcACTGTTAGAAAACCGTTCTTTAAGTATTTAAGGCAAAAAAaccctgttattttatttccttagtACATATTATGATTTAACACCTAGTAAAAATTAAGATATCCACAtatctttgttgttttcttgtaattgcagttcatgtttgtattgtgaaacGTGAAACAGCAAGATTTAAagatgctgtgaaatgaatgtCCTCACTTGATAACTTAGCAAAGTTTTTTGttcttccctcccctcccctggAACCTTGGgattaccaaaacaaaaagtgtaagAGTGCAAAATGCGTCTTCGCCGCGCCCGGAGCCTCGCTATAGCTGGGACACTTTCCTGGGCAGCGGCCGGGGCCGTGGGCCTTGCTCGCTCGCTCGCCTGCCTTCGCTCTCCAGTTTGCCAGAGCGGAGCTGGTGGGGTTTGGGCGGGAGGGCCGGGGGGTCGGAGCTCACGGGGACGGAGAGGCTGTGAGGTAGAGGCACGGGCCGCCGGGAGTTTGTGCGCTCGTACACGCTGTACGGCGGGGGCGTCTTGTTCTCCCTCCTCGTGAGTTCGTCCGAGCCGCTGGACGTGGACGTCGTCAGCATGTGTTCGCTCGGCTGGGCTTCGGTGCCGGACGTCTCCGACACGCTGCAGCGGCTGAGGGAGGAAATCCCGCTGCTGTAGCTTCCTGACAGGACCGGAGAATTGGAGACCAACCCAGAAGACTGGCACTCAGTTGGAGACGGTGTGAAGGACTGGATGGAGGCTTTTGCGGCGATCTGGGGGTGGGGACCGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138472 True 2417 lncRNA 0.39 2 9010140 9014326

Neighbor

gene id symbol gene type direction distance location
AMCG00006559 LOC102797044,LOC102787037 coding downstream 98137 8887691 ~ 8912003 (-)
AMCG00006554 NA coding downstream 140618 8858345 ~ 8869522 (-)
AMCG00006553 NA coding downstream 153466 8851743 ~ 8856674 (-)
AMCG00006550 foxp2 coding downstream 497518 8477343 ~ 8512622 (-)
AMCG00006549 mdfic,si:ch211-262n1.4,LOC107656347,LOC107658868,LOC107584008 coding downstream 585542 8419388 ~ 8424598 (-)
AMCG00006562 LOC105007066,LOC106576072,LOC106609221 coding upstream 181110 9195436 ~ 9197467 (-)
AMCG00006571 dnm1l,LOC107716704,LOC106561645 coding upstream 557163 9571489 ~ 9587506 (-)
AMCG00006570 NA coding upstream 574605 9588931 ~ 9592122 (-)
AMCG00006573 NA coding upstream 591212 9605538 ~ 9606425 (-)
AMCG00006572 NA coding upstream 609759 9624085 ~ 9625892 (-)
G110369 psmc2 non-coding downstream 1100912 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 1253288 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 1441981 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 1442573 7567204 ~ 7567567 (-)
G110269 magi2 non-coding downstream 1451672 7558205 ~ 7558468 (-)
G110594 NA non-coding upstream 462156 9476482 ~ 9477506 (-)
G110720 NA non-coding upstream 1290605 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 1407235 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 1588769 10603095 ~ 10603733 (-)
G110917 NA non-coding upstream 2657243 11671569 ~ 11672483 (-)
G110570 LOC106576073 other downstream 10876 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 216078 8783905 ~ 8794062 (-)
G110507 NA other downstream 285788 8722388 ~ 8724352 (-)
G110195 NA other downstream 1903002 7078389 ~ 7107138 (-)
G110140 NA other downstream 2224289 6785313 ~ 6785851 (-)
G110605 NA other upstream 531169 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 1072949 10087275 ~ 10107285 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 3003543 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 3035168 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 3057064 12071390 ~ 12130383 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G75702 NA non-coding NC_048565.1 CM023219.2 68232213 ~ 68285626 (+)
mexican tetra (Astyanax mexicanus) G62036 dock4,LOC108425388 non-coding NC_035903.1 CM008306.1 4999241 ~ 5002904 (+)