G110594


Basic Information

Item Value
gene id G110594
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 9476482 ~ 9477506 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU138492
tagaatttaaagtgcattacaaaataaatactaatctTACCCACAATTtgtaaatgtcttaaaaatataaaccaagCTCCATGTACAGTTAAGCATTATATTTTGTCACAGTGATTCCATACACTATCCGGACTACAAAAAACATAGCATAAAATGTGTGTCACTAGCTGGGacttaacacatttcaaaacccttacatttttaaaaattacatatttgatCATCTATAGAATTATTGAAAAGAAtggcagcattttttttttagtctgcATCTTATTTCATATACATAACTGTTTTGCAAACAAGGGGAAATGAATCTAAAGTGTTCTAAAGGCAATGGTTAATAGAAAATATTCACAGTCGTCTCTCCGAAGTTCGGTGAATTGTTCACATCTTGCAGaggatgttttttcttcagcaaATACAACtccttaaattaaaatctgtatCTTCTTATTGAGCAGCACTGCCAGCATCAAACAACTTCTTTCTGCCCTCCATCCCAGACATGGCCTCCACATTTTTACGCCAATCAGTTACTTCCTTCTCCTTTCCTTCCTCTTCTTTCTTCACCGATTTGAGATTGGCTCTCAGGTCGATGGATTCCTTATGTTTGGAGCCCAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
TU138492 True 624 lncRNA 0.35 3 9476482 9477506

Neighbor

gene id symbol gene type direction distance location
AMCG00006562 LOC105007066,LOC106576072,LOC106609221 coding downstream 279015 9195436 ~ 9197467 (-)
AMCG00006559 LOC102797044,LOC102787037 coding downstream 564479 8887691 ~ 8912003 (-)
AMCG00006554 NA coding downstream 606960 8858345 ~ 8869522 (-)
AMCG00006553 NA coding downstream 619808 8851743 ~ 8856674 (-)
AMCG00006550 foxp2 coding downstream 963860 8477343 ~ 8512622 (-)
AMCG00006571 dnm1l,LOC107716704,LOC106561645 coding upstream 93983 9571489 ~ 9587506 (-)
AMCG00006570 NA coding upstream 111425 9588931 ~ 9592122 (-)
AMCG00006573 NA coding upstream 128032 9605538 ~ 9606425 (-)
AMCG00006572 NA coding upstream 146579 9624085 ~ 9625892 (-)
AMCG00006580 NA coding upstream 591516 10069022 ~ 10084834 (-)
G110576 NA non-coding downstream 462156 9010140 ~ 9014326 (-)
G110369 psmc2 non-coding downstream 1567254 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 1719630 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 1908323 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 1908915 7567204 ~ 7567567 (-)
G110720 NA non-coding upstream 827425 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 944055 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 1125589 10603095 ~ 10603733 (-)
G110917 NA non-coding upstream 2194063 11671569 ~ 11672483 (-)
G110939 NA non-coding upstream 2311434 11788940 ~ 11789234 (-)
G110570 LOC106576073 other downstream 477218 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 682420 8783905 ~ 8794062 (-)
G110507 NA other downstream 752130 8722388 ~ 8724352 (-)
G110195 NA other downstream 2369344 7078389 ~ 7107138 (-)
G110140 NA other downstream 2690631 6785313 ~ 6785851 (-)
G110605 NA other upstream 67989 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 609769 10087275 ~ 10107285 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 2540363 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 2571988 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 2593884 12071390 ~ 12130383 (-)

Expression


Co-expression Network