G110605


Basic Information

Item Value
gene id G110605
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 9545495 ~ 9560104 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU138509
GTTGGGCCCGCCTGCAGTTCCAGGAGAGCCGAATACGTTCCCTTTCTCCCACATGCTCTTGATGTTGCGGACATCCCCCACGGGCAGGTCTGCAGTACCCGGCTTCGGTGGCTTTGGATCCTTGTTGCTCTGAATAGCAGTTGTGTACTGCTCCAGTTTATTGTCAATCTTGGACACAATCGGTGTGTGTGATGCCTTAACACCACTTTTCTGGGCTGACTTGTTCAGGAACTCTGCCCTTTCTCCAATCTTCAGCGACGAGCCCCGTGGACTGACACATTTAAATGGCTtcttcccctccccctcagGAGCCTCTTCTGTGATCTTCTGCCTCTTCTCGGCTGCCTCTGCTCGCCTCTTCTCAATCTCTTCCTTCATCCTTCTCTTCTCCTTCTCTGGCCTTCTTCTCTGCCTCCTCCTGTTTCTTGCGCTGCCCCTCCTCCTCCAACACCTTCCTCCTCCcttccctcttcctcttcagctcctccagctccatCTCGGCCTCCTGCTGCTTCTGCCTGAGCTTCTCGAACTCGCCGCTCTCCGTCTCGTCGCGCCGCCgcttcagctcctccagcttGCGCTCGGCCTCCTGGCGAGAGGCCGCGTCCTGCTCCTCGGCTTCTGGGCTGGCCTTCACATTGCCGCGGCTAGGGGTCCTCTCCGGTTTCTTGTGTTTCTCCACGTGGAATTCTTCTCCGTTCTGTTGTTTCGGTTCTGCAGGCGCTGGCTTGTGACGATGGCCCACTTCTGGCTCCTTAGTTATCTTTTTCTCAGTCACCTTTTTGTCAGTCACCTCATCTCGCGTGAAAGTCCTTTTTGGCTTTTCTTGTTTGGCCTCCTCTTCTTTCACCAAGGTCGGATTAGGCTTCTCCTCAATAAcCTCTTTTCTCTTGAAACATGGTTTGGGTTTCTCCTGTATTACCGGCTCTTCCTTCGGTACGGTCTTCTCCTCCACCACCTCCTTTACACGCCTTTTAGGTTTCTCCTCTATCACctcCTCTTCCCTAAACAGTGTTTTAGGTTTCTCCTCGATCACCTCcTCCTTTACACGCCTTTTAGGTTTCTCCTCGATcacCTCTTCCCTGTACGATGTTTTAGGTTTCACCTCAATCACCTCTTCTTTCATTATGGAACTTTTAGGTATCTCCTGTATCTCCTgtatCTCCACTGTTATGTTTGGTTCTTTAATTTTTTCCTCCATATATTCCTGCTCCATAAAGTGAGATCTCCTAGGCTTTTCTACCActgcctcctcttccttctccaccaccacctcctGCTGGGGCTCCTCAGGCACGGCCTCCTCCTGGGTAGCTTCCTCTTCTTCTGGCTTCTCCTCGTCCACCTTCTGCTCCTCTTTGTCTTTATAGGCATTGTACTCAGAAGGCCtgtcctcctccttcttctcatTCACCAccacctgctcctcctcctgTGCTGGTGGGCAGTAGCGGCCCTCAGTCTTCTCATCTTCGTGGTTGTCCATGGAGACAGTGGGGTCGAACTCCTTCTGCCTGTCCAGGGCCTCCTGCAGCCGTCTCTGCCGACGCTCCTCACGCTTGGCCAGTTTTTCCAAGAGAGCCTGCTCGTCCTCGGACGCCGCTGGTGGGATCTCGGACACCGCCGGTGGGATCACGGACACGCTCTTCGGCTCCTCGTCCACCACACTGGAATAATGCAgcacagaaatgttttgttgaaTTTGAACTTTGAG
>TU138511
TTGTCTTTTACATTATCTGTTTATTGTGGTTGCAGATTCCATGATACatagtttaaacattttttttgtatgaagCTATACACTACAAAAGACATATCCATAGTGTTTACAAAATGGCAGACGACGTGAAGACAATTTGCATAGTTTTGTCCCTATACAATAGTTGAGTGcgtttataaaatgtaaacaaaaaaaaacaaaaacaaagtagaacaataatttcaaatgacATTCTAAACACTTCCGAAGAACTTCTTTGGGCTAGATCTTCTTTGcttaatagaataaaatacaaaatgtatgtatgcgtttatttattttcctgctggCACAGGCATGGGTGAACTTTGATGAATTGTTCAACTCCTGTGCCACCTGCAGTGTTATATTtgataatacataatttgaacTGGTCGCTATCCAGCATTTACAGTCATGCCATAAACGCAGCAtagtattaaaatgcaaaattgcAATGTATAAGAATAACtctcacaaaaataatatgcGTCAAGAAATGTGACAAACTGTACTGTTATTTTTACTTGTTCCCCTAGAATCATATAATGCTAGTTATggtaaaatttaaaaatacattgtagcAATAGTTGTagcaaataaacaatcaataatTAAGAATATATGCATATAGTTATACTTTGGGTTGAATGcaattcagatattttttatttttagtttaatgtGTAATTCTGGAAGATGATGTAAACAGTACAGTGTATCCAATTCAAATTAAGCATtaccaacatttattttatttaaacatataattaattaGTACCCCGAAGCCATATTAATCCACAATAAATGCTTTATGCATTATCTTAGTcgaaaagtatttgtttaaacatttgaatatcacattattaactttcaaaaacataatttaggaAGATTTTCCCCTTCGGACGGtagtatttttcaaaatattttgatcCCTAGAATTTGAATCAGTATTTTAATCTTCTGGGCTGTTCATGATACAGTGAGAAAGAATATTCTCATCAGTCaggttaaaataatatagtGACATTATCAATGTGAAACACTAGCACATTCTATATTTCCCTTCTCACATTATAAGTTTAAGGTCTCGATTTTAAATGTGACACCaataagacttttttttcctttaaatagtCGGGATACTGAATATCctaacaattaaagttaataatttatataacatgcaagttttttttttttttttgttccctcacaagaaaaataaaaatatcaggtCTGGATATGGCACAAATTACTATTGAGATGTCCTCTTTCAGagcaacatttatatatataatagaggAAATCGCCTTGTAAAACTTTAGTTCAGTTTCAGAACACTGtagtttacagcatttttccatTCCAAGCAAAAGgactgtgtgttactgtaatattaaaacaaaagcctGACTTTGCTTGCTCTAACACTAATAGTATCACTGCTAGAATACTGTAGTAATCTTGATGTGTATTGGCCGTTACTACCTAGTGCGATACTTGTTCAATGTCAATGAATGGTTTAAGATTGTCAAAACAAGTGCTATATACTGTTTCTAGACCATTTATATATTATGGAAATGGTATATGGTCTCATGCCAGTAGATATATGCAGTCACAGGCATTACAAAATTAGTCTGAAGACTAGGGGCACCATGTAAACAGTGCCTTGTCAGGATTAGGACTTTAATGTTTGGGGCACTCTAGACCACATACTCCATGCATTCACAATGGCCATCACATGTCACTTGCTTCTTTCATGAAAGAAAAGTTGTCAGTTGCATAAGAGTTGTTTACGGGCAGTGCTGCAAATGCTTCAACTTTTCTATTGAAAACTGccaatttctctctctgcagaatAACCAAAAAAGTTAACTGAACATCAAGTTCTCAAAGATAAACTGCACCATATCCAGCTCAGTGGGGGAAAAGGTGTTGTACAATTCTGCTATAAAGGCATTGTACTCAGAAGGCCtgtcctcctccttcttctcatTCACCAccacctgctcctcctcctgTGCTGGTGGGCAGTAGCGGCCCTCAGTCTTCTCATCTTCGTGGTTGTCCATGGAGACAGTGGGGTCGAACTCCTTCTGCCTGTCCAGGGCCTCCTGCAGCCGTCTCTGCCGACGCTCCTCACGCTTGGCCAGTTTTTCCAAGAGAGCCTGCTCGTCCTCGGACGCCGCTGGTGGGATCTCGGACACCGCCGGTGGGATCACGGACACGCTCTTCGGCTCCTCGTCCACCACACTGGAATAATGCAgcacagaaatgttttgttgaaTTTGAACTTTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138509 False 1717 TUCP 0.54 17 9545495 9552080
TU138511 True 2324 lncRNA 0.36 2 9545495 9560104

Neighbor

gene id symbol gene type direction distance location
AMCG00006562 LOC105007066,LOC106576072,LOC106609221 coding downstream 348028 9195436 ~ 9197467 (-)
AMCG00006559 LOC102797044,LOC102787037 coding downstream 633492 8887691 ~ 8912003 (-)
AMCG00006554 NA coding downstream 675973 8858345 ~ 8869522 (-)
AMCG00006553 NA coding downstream 688821 8851743 ~ 8856674 (-)
AMCG00006550 foxp2 coding downstream 1032873 8477343 ~ 8512622 (-)
AMCG00006571 dnm1l,LOC107716704,LOC106561645 coding upstream 11385 9571489 ~ 9587506 (-)
AMCG00006570 NA coding upstream 28827 9588931 ~ 9592122 (-)
AMCG00006573 NA coding upstream 45434 9605538 ~ 9606425 (-)
AMCG00006572 NA coding upstream 63981 9624085 ~ 9625892 (-)
AMCG00006580 NA coding upstream 508918 10069022 ~ 10084834 (-)
G110594 NA non-coding downstream 67989 9476482 ~ 9477506 (-)
G110576 NA non-coding downstream 531169 9010140 ~ 9014326 (-)
G110369 psmc2 non-coding downstream 1636267 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 1788643 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 1977336 7567888 ~ 7568159 (-)
G110720 NA non-coding upstream 744827 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 861457 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 1042991 10603095 ~ 10603733 (-)
G110917 NA non-coding upstream 2111465 11671569 ~ 11672483 (-)
G110939 NA non-coding upstream 2228836 11788940 ~ 11789234 (-)
G110570 LOC106576073 other downstream 546231 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 751433 8783905 ~ 8794062 (-)
G110507 NA other downstream 821143 8722388 ~ 8724352 (-)
G110195 NA other downstream 2438357 7078389 ~ 7107138 (-)
G110140 NA other downstream 2759644 6785313 ~ 6785851 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 527171 10087275 ~ 10107285 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 2457765 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 2489390 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 2511286 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 2577078 12137182 ~ 12140405 (-)

Expression


Co-expression Network