G110757 (LOC103376870)


Basic Information

Item Value
gene id G110757
gene name LOC103376870
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10603095 ~ 10603733 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU138722
cacaacttTATTGTTTAagagcagtttttcttttctctacaCTGCAGTGATAGAATTGGATAGACAATCCCATatgtttgtgaaatatatacaaactattCTCAAAAATCATTCACTTTCAAGATCTatttcaatatacactcacctaaaggattattaggaacaccatactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttggcccatattgataggatagcatcttgcagttgatggagatttgtgggatgcacatccagggcacggagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattcgacctttgtgacatggtgcattatcctgctggaagtagccatGATGGATCcatgttctcattctgtttacGCCAAATTCTGACTCTACCATCT

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138722 True 544 lncRNA 0.40 2 10603095 10603733

Neighbor

gene id symbol gene type direction distance location
AMCG00006588 NA coding downstream 51362 10551428 ~ 10551733 (-)
AMCG00006587 NA coding downstream 75795 10521312 ~ 10527300 (-)
AMCG00006586 NA coding downstream 91734 10506051 ~ 10511361 (-)
AMCG00006585 NA coding downstream 135389 10444225 ~ 10467706 (-)
AMCG00006583 adamts20 coding downstream 180575 10403574 ~ 10422520 (-)
AMCG00006591 nell2,LOC105908795,LOC108428412 coding upstream 35925 10639658 ~ 10653405 (-)
AMCG00006592 NA coding upstream 100340 10704073 ~ 10731630 (-)
AMCG00006597 NA coding upstream 158446 10762179 ~ 10816162 (-)
AMCG00006598 NA coding upstream 273982 10877715 ~ 10892122 (-)
AMCG00006599 NA coding upstream 303964 10907697 ~ 10917640 (-)
G110733 LOC103376870 non-coding downstream 133035 10421561 ~ 10470060 (-)
G110720 NA non-coding downstream 297848 10304931 ~ 10305247 (-)
G110594 NA non-coding downstream 1125589 9476482 ~ 9477506 (-)
G110576 NA non-coding downstream 1588769 9010140 ~ 9014326 (-)
G110369 psmc2 non-coding downstream 2693867 7907558 ~ 7909228 (-)
G110917 NA non-coding upstream 1067836 11671569 ~ 11672483 (-)
G110939 NA non-coding upstream 1185207 11788940 ~ 11789234 (-)
G110940 NA non-coding upstream 1186319 11790052 ~ 11793501 (-)
G110942 NA non-coding upstream 1190803 11794536 ~ 11796342 (-)
G110957 NA non-coding upstream 1296230 11899963 ~ 11902168 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other downstream 495810 10087275 ~ 10107285 (-)
G110605 NA other downstream 1042991 9545495 ~ 9560104 (-)
G110570 LOC106576073 other downstream 1603831 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 1809033 8783905 ~ 8794062 (-)
G110507 NA other downstream 1878743 8722388 ~ 8724352 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 1414136 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 1445761 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 1467657 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 1533449 12137182 ~ 12140405 (-)
AMCG00006641 mrps33,LOC106591474 other upstream 2272559 12876292 ~ 12878656 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G494394 NA non-coding CI01000340 null 14066592 ~ 14066932 (+)