G110849


Basic Information

Item Value
gene id G110849
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11120390 ~ 11120735 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU138835
TGAGATTCCTGCATTCATTCACTCACTAACCTGccaacacataaacacattcatattttgtactaGAGCAACACTATTTGTACAGTAAACCTCAGTGTTATGCAAGGTCACCCCTTATTAATGAAGGACTGCAGAAAGCAGCCCATCATTGAATTCAGAACTAAAATCTTTCACATTTACACATATGAATGACTTATATGCCGAGGTGTTATAGTGTATCATCTTGGGATAAATCTTCTTTTATGTGTTATGCACATTGGTCACTCTTGATATGCCTCCTAATATCCATGTTTTGTTGACCTTcggatattttatttatacttaattTATAAAGTCTCCAAATGTG

Function

GO: NA

KEGG:

id description
ko00280 Valine, leucine and isoleucine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU138835 True 346 lncRNA 0.35 1 11120390 11120735

Neighbor

gene id symbol gene type direction distance location
AMCG00006601 atp23,LOC106609469,LOC106576246 coding upstream 921 11116560 ~ 11119469 (+)
AMCG00006594 NA coding upstream 246833 10856045 ~ 10873557 (+)
AMCG00006593 arid2,LOC106576411 coding upstream 290881 10828315 ~ 10829509 (+)
AMCG00006595 NA coding upstream 301786 10786260 ~ 10818604 (+)
AMCG00006596 NA coding upstream 356540 10761168 ~ 10763850 (+)
AMCG00006606 NA coding downstream 185156 11305891 ~ 11321973 (+)
AMCG00006610 NA coding downstream 538152 11658887 ~ 11706824 (+)
AMCG00006609 syn3,LOC106576044 coding downstream 613948 11734683 ~ 11735631 (+)
AMCG00006608 syn3 coding downstream 653251 11773986 ~ 11790179 (+)
AMCG00006614 ptpro coding downstream 763202 11883937 ~ 11902046 (+)
G110722 NA non-coding upstream 750459 10369715 ~ 10369931 (+)
G110681 NA non-coding upstream 1088544 10030426 ~ 10031846 (+)
G110590 NA non-coding upstream 1663479 9456665 ~ 9456911 (+)
G110558 NA non-coding upstream 2231898 8887686 ~ 8888492 (+)
G110523 NA non-coding upstream 2325059 8795060 ~ 8795331 (+)
G110883 NA non-coding downstream 229149 11349884 ~ 11350117 (+)
G110916 NA non-coding downstream 550834 11671569 ~ 11672448 (+)
G110930 NA non-coding downstream 672433 11793168 ~ 11793535 (+)
G111008 crebl2,crbl2 non-coding downstream 902075 12022810 ~ 12024549 (+)
G111063 NA non-coding downstream 1230022 12350757 ~ 12353363 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 1552114 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 2396324 8710750 ~ 8724066 (+)
G110445 NA other upstream 2943604 8175760 ~ 8176786 (+)
G110279 NA other upstream 3465196 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 4208136 6911876 ~ 6912254 (+)
AMCG00006624 NA other downstream 1025010 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 1499327 12620062 ~ 12651815 (+)
G111197 NA other downstream 1890449 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 2812931 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 9816762 20937497 ~ 20944977 (+)

Expression


Co-expression Network