G110940


Basic Information

Item Value
gene id G110940
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11790052 ~ 11793501 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU138946
ttccctcactgtacctccatgtgaataaaataaataatatgtagaAAACAGGTCTAAGTGTTATTTATGACATAATTCACTGTATTCTACCATGCTTGGACATCTTGGATTTCATGCTAAGGAAGAGAGAGCTCTTGTGGCTCTGTGTATATGTCCCTGCTgttctatttaaaaatgaaatttatttaatagtttcatttatttgcatgaTGTAATAATGAATGGCTATATTATCATAGTTTTTATAAttgtgattattgttattattagtaatcATATATTTTTGGTATTATGACcatgtataacaaaataaaagtcaataattgcttaaattaaattgtttataagTCACAGCTCATTGCTTAATTGTTCAGATAGTtattagctatatatatatatatatagcctggaCTAATATGGTATAAGAATGCAAtaatagttttagttttgtcaggTGGCACTTCTCGAGTAAAACACCACACATGGACAGTCTACCAATGAGAGTGTTATATAGGTTAAGAAAATactattgtaaaatgttataataaaaataaaataatgggtAAAACCATTACTTGTGTAGtgaacacaaatattaaaactaataataattataaccagaaataattaattcaattaatcttaATAGACACTCTACTTAATGTTTTGCTAGtagtttttttaaaatgtttattttgctacGAAAGGCAGTTGATTGCATTGGAGAAAGTGGGTGAAGTTTGGATAAGATGAGTGAAAAAGTGTTTTCCTTCATGTTTTCAGGAAGGCGAAATATTATCGGAAGATGGTTTTTACTGACTTACTGTATCACAATTGTAAGGAAACCCAAGATTAAAGTGTATTATCCACACCCAACTCTTATGATGTAATCTGTACGATATCACAGACTAACACttctgttacattttattttggatatGGTGCTCACTTAATCTAACACATTCTATGATGAATCCCAGGGAAATGTGGAATATATGCTTTTTAAGGCAGCTTGAGGACTACAATAGATCAAACATATGtggaattttaatttagtttgtgtAGTTATACATTCTGCTTCACTAAAGCATGCAAGCTTAGCTCAACGACCACAAACATTAAACTGGTCTAGAAAAATATTTCTCTCTGGATATCATTATACAATTTTCTTAGAAATTAGCAAATAATTAGTGTTTCAGAATGTCAGGATCTACTATGGGGTTACAAAGGTAAACTGTATTGTGAAAAACTTGCCAAAACTAAACTGGCagataaaaacagattaaatcagACTGCTTtggcattttctcattttgctTGGAAGACTTGTCAAAGAAGCCACTATTAATAAtttccattacaaaataaatcaagcatTTGTGAAACAAAAGGAATTAATTATCTGTAGTAGGAAGCTCACTGTACTATGAGCAAAAGTATTTTACAGGTCTTGATAACAATTTAACATACAAAGTTTTTATGTTGGATTATTCTACAAAAATGccaaatataaagtatttttggACTGATTATtctgaaaattgtatttgtgttctttTAGTTTTATGAACAGAAATGAATGTACCTGTACCTTTCTGTACCCAACTTTTCCTTTGCTACCACTAATAAGTAAACATCAGAAGTAAAATACATCTGTTGCATTTGTTGGAAGAATCTCTCTTTGgtacaattaaacaatgttatattacaatttttCTGTCTTGCTCCCAAGTTATTCATGTATCTTATGCCCCCCAAAAAAGGAGGCGGCACAGAAAcaaagtatattatatatagcgtactaaatgcaaaactgtgttattgtttctttatattaattaaaatgctgatCTAAAACTACAAATTACTTATGGAAGAcccttcatttctttttcatattcttAGAAATAGTTTTTTAGTAGTTATATGGTAtaaatactatactataaatACATTAGCATTTATACTTCAAATAAAAAGCTATGCGTTTACATAGTCAGATGTGTTCATTTATTGTAAGCAATACAAGGTCTGAATAAGGTTTAACCACCAGATGTGTCTTTGGACTAAGGACTGTATGATTAGCATAATAcctattaatacaatattattgcaGAATTCTTTTGCATaatatgtagttttttttgCAAATCTGGAGGATGGTGCTGTAAGAAAATGGCCTTTACAACCAGAGTATGACTAATACTCCTACctaccatttacattttctatgcCCACCTTGTACTGCAGTGCAAAAATAATCTCCTTCTGCTCTTTACAGTTTTAACATTCGAGGGCTCTTCTGAGTGGCGTTTCCGTCTGGAGAGCGAGGGGAATCGGTTCACCTGGACATTCCCAGTACAATTCCAAGTTATAGCAAATTTCCAATCATGGAATCAAATGTTTGgcagaaatgcaataaaatatattgttgttattgtataaTAACAAAACTCCACATAATTTCAATTTTGCATGCCTGAACTGGATTACTTTGATCTTGCCCTCAGTGTGAGCTGAATTATATTATTGACTCCTCTCCTCTGTCAGTGATAAAATCCAGCCTAGGTGTATGCACTGGTAATAGTAGTACTGACAACACTCGATATCTATACATAGCCTAGCCTTCCATGCAAGGCAGTTATGTACTTTCCTTCTCTTACAGCACGATGAACTTGCACTGTTTCCATTTACTCTGCAGCTCATTTGAATCATGGAGAATTACAAGGTGCAAAATTCAGAGATGCACACTTTCCTTAAGTCACGTTGATTCCATTCTAATTTGACATTTCAAGGTCCCTCAAGTTCTATAAAAGGCAGTTACTCCACTCTTCTCTGGGGGGATAGTGAATATTAAATGCTAACCAGAATGTAACAGAAGGCACACAATTGGATTTAATACATAttgaattataatgttttgaatattaaataaaaaagcattttcaccTTTACTTTCTCTAGTGAATTGTCTTCAATAAACGGATTGAGAACACTGAAGAGTTGAACAGAATGGTATCAGGCTATTTATACAGAAATATTACACGTGGGTGTACTTAAATTTCAAGctacaaatggaaaagaaaacaacagctaGGTGAAATAAGAAAGGCTCTGTGTTTGAAACCACTTAATAAGAACCATCGCAgtatctctttttttcttccaatggCTCGTGAAACTCTCAAAAACTCACCACCCCCCGCGCATCATTATTTGAAAGGCCGCAGAGTACAGAAAGCATCCTCTCCCCCTACCTGAGGAAGTGCGTTACAGGCTCACTATTCTTTTTCAAGGTTTAGCCTGAGAAATTGTTGTCAAATTAATCAGAAAAAAGACTGGCAAAAGATTTCCTCAAACTCCGTATGGTTTCTGCCTTAGCCTCGTCTTCAGTTGCGTTGCCACGCTGTGGGGTTTCGGAAACGCTGAAGGCGTTCGTCAGAGACTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138946 True 3450 lncRNA 0.33 1 11790052 11793501

Neighbor

gene id symbol gene type direction distance location
AMCG00006613 timp3,LOC106609153,LOC100696712 coding downstream 34572 11738219 ~ 11755480 (-)
AMCG00006612 NA coding downstream 170228 11612595 ~ 11619824 (-)
AMCG00006607 fam19a2,LOC103364248,LOC108248567,LOC103023565 coding downstream 238491 11550314 ~ 11551561 (-)
AMCG00006602 NA coding downstream 558863 11213847 ~ 11231189 (-)
AMCG00006604 NA coding downstream 672186 11102085 ~ 11117866 (-)
AMCG00006611 rerg,LOC107569200 coding upstream 32400 11825901 ~ 11839726 (-)
AMCG00006615 NA coding upstream 114301 11907802 ~ 11931159 (-)
AMCG00006619 NA coding upstream 171767 11965268 ~ 11984815 (-)
AMCG00006626 NA coding upstream 548246 12341747 ~ 12346094 (-)
AMCG00006627 rpl18a,LOC106593275 coding upstream 557266 12350767 ~ 12354277 (-)
G110939 NA non-coding downstream 818 11788940 ~ 11789234 (-)
G110917 NA non-coding downstream 117569 11671569 ~ 11672483 (-)
G110757 LOC103376870 non-coding downstream 1186319 10603095 ~ 10603733 (-)
G110733 LOC103376870 non-coding downstream 1319992 10421561 ~ 10470060 (-)
G110720 NA non-coding downstream 1484805 10304931 ~ 10305247 (-)
G110942 NA non-coding upstream 1035 11794536 ~ 11796342 (-)
G110957 NA non-coding upstream 106462 11899963 ~ 11902168 (-)
G111158 NA non-coding upstream 966070 12759571 ~ 12760836 (-)
G111182 NA non-coding upstream 1161109 12954610 ~ 12959628 (-)
G111389 NA non-coding upstream 2210252 14003753 ~ 14004141 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other downstream 1682767 10087275 ~ 10107285 (-)
G110605 NA other downstream 2229948 9545495 ~ 9560104 (-)
G110570 LOC106576073 other downstream 2790788 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 2995990 8783905 ~ 8794062 (-)
G110507 NA other downstream 3065700 8722388 ~ 8724352 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 224368 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 255993 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 277889 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 343681 12137182 ~ 12140405 (-)
AMCG00006641 mrps33,LOC106591474 other upstream 1082791 12876292 ~ 12878656 (-)

Expression


Co-expression Network