G110957


Basic Information

Item Value
gene id G110957
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11899963 ~ 11902168 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU138964
ctAAAGAGTTTTGCATTAACAAAAATGTCTAGTTTGCAAAAAAAAGGCCAAGCTTTGTATTATTCATAAGAATAGATATTGAAACGTTTATTCTTTAAAGAACACAAGTTCAAACTTTGTGAAAAGGACTCCTTTTCAACCGCTTGAAGCAGTAGAAAGTCATCCTCCTAGGAAGTGACAGAATGCACAAGAATGGCACCAACGACAAAAACAGTTGGAATCGACACGCATGAGCAGAGCGAACCTACCTACACAGTGCACAGCTCTCTTCATGGTCTGAGACGATGAGGGCGGCTGCAATCCGCACCACTGCTTTCTCAACACAAAgggtattacacacacacacacacacacacacacacacacagggaaaggtGCCTACAGTCTTCCAGCTAGCATTGGAGTCGGTGACAGTTGTTAGTATTTGGCACCCAGGCAACACGATGCAATACCGCACTCAAAGGACAAAAAGCCAAGACAGCACGTCAACATCAGCCTGGCTGGTGACTGCACTTCTAAACTCATTGAGTTTGACGGTGCATCTGCAAACTATATAGGTGATTGGCGTTTCGAGTTTCGGGAAGATGAATGAACTAAAAGTTTAAGATGCGTCTAGTAGCTGTTccagaaaaatatgtatgtgcagaaaaaataactaaaacgtGACACTTATACTTTTTTTGGGCTAATAAAGATTATTCTAAAACCCATTATTCAATTGGCATATTGAAGcacaaaaaaagtacaatacagGTGTCTCTGCTCAGTTCTTAAGAACATTGTGCTATCTGCGGTGTATGGTGAAATGAGACGAACACACATATAGAGGCTGAATAACTTCAAATGTCCTAGTAAGTAACAAAAAGCCTTTTGTCCCGCTTGCCCTTTGTCTCAAAGCACCTGACGCTGAATCAACAGAAATCACAATGATGTCTACTGCTGTCTCTAGATTCACATGGACGGCACACAAAACACACCCCATGAAATCCAAAACGCACAGAGAAAACAGGTCCAAAGTGGaatgaaagtattcacaccggAATCCCAATGCAGCTTGGGAGAAGGTAGCGCTGATTTAAACAGTTGCTTAGCAGTGCCTATCCAGACGCCTTTCCAGTTTGATTTGCTCAATCATAATGCAACATGCATCAAATACACACTACAAATCAAAGAGTTTCTACTTGCAACAttcttaaattgtgttttttttttttttctttttaacagaactatgctcattttattttcttgtcaaaCTGTATTTGGCACACCAGTGCAGTGGTAAGGCTAGGCAACTGACAAGGCAATTTGGCAACAGACATAACAGATTACTTTTTCCTCGAGACTCCGTGCACCTATTATATCCCAGACTATCTATATAATTGATATTTTCAAACTAGTGGTGTTGTAATGGAATGGTCCACTGTTTAAACATTCAGGTTATAAATACAGGTCCCTCTACACATCTGGTGGCAGTGATTTTCCGTTTAACTTTTCATGGTCACACACTAATGCTGCCCATCGCGACATGATGAAAACTTGCTGTTTCTGCAATATTTGTGAGTACTAAAACTAGTCAGTGTAATTGGGTTAATGTGCTAAAAGTTCAGCTTATTGGATAAACTATGACTCCCCCTATTACAATTTAGAAACTACTTTTGTTTCAACTAATCCGGAGACTACATCGCTAACTAACGACATTCCTACACTTGCTCAGTAATCGGACATCCCTCCTCTCAGTGTTCAGTAATCACTCTTGTTTGACTCGGGTCTGTAAAGAGATACTTATTGCACTtctttttcaaaaggaaaaaagtctGCAGCATCACTATTTCGGGAATGCCAGGTGTTGCTGTCCGCAGTTCTCAGGTTGCCGTTTCCGTGTCCGCCTCACTGTTTCATCCTGTTCTGGGTGGGCAACTATTTGGTCCAGCCGTGAGAAAGTCCGCATGGGAGGAGCGCTTCATAGTCAAACGCGGGTTCTTTAAGGCAAGGCTCCTTCCACTGCTTTCACCGTTTCAAACAAAAcgttttctgctttttctgttgttgttttgtttttttggtataaATGGTAGTTGGAAAAAAAACTCTCTTGGCAGAAAGCAAGCACTAAAGCCTGAAGCAAGGAAAGGCATGTGAACCATTTCAG

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138964 True 2152 lncRNA 0.41 2 11899963 11902168

Neighbor

gene id symbol gene type direction distance location
AMCG00006611 rerg,LOC107569200 coding downstream 60237 11825901 ~ 11839726 (-)
AMCG00006613 timp3,LOC106609153,LOC100696712 coding downstream 144483 11738219 ~ 11755480 (-)
AMCG00006612 NA coding downstream 280139 11612595 ~ 11619824 (-)
AMCG00006607 fam19a2,LOC103364248,LOC108248567,LOC103023565 coding downstream 348402 11550314 ~ 11551561 (-)
AMCG00006602 NA coding downstream 668774 11213847 ~ 11231189 (-)
AMCG00006615 NA coding upstream 5634 11907802 ~ 11931159 (-)
AMCG00006619 NA coding upstream 63100 11965268 ~ 11984815 (-)
AMCG00006626 NA coding upstream 439579 12341747 ~ 12346094 (-)
AMCG00006627 rpl18a,LOC106593275 coding upstream 448599 12350767 ~ 12354277 (-)
AMCG00006628 rtcb coding upstream 473740 12375908 ~ 12380970 (-)
G110942 NA non-coding downstream 103621 11794536 ~ 11796342 (-)
G110940 NA non-coding downstream 106462 11790052 ~ 11793501 (-)
G110939 NA non-coding downstream 110729 11788940 ~ 11789234 (-)
G110917 NA non-coding downstream 227480 11671569 ~ 11672483 (-)
G110757 LOC103376870 non-coding downstream 1296230 10603095 ~ 10603733 (-)
G111158 NA non-coding upstream 857403 12759571 ~ 12760836 (-)
G111182 NA non-coding upstream 1052442 12954610 ~ 12959628 (-)
G111389 NA non-coding upstream 2101585 14003753 ~ 14004141 (-)
G111421 NA non-coding upstream 2234160 14136328 ~ 14137746 (-)
G111448 rap1b,LOC106576640,LOC107695907 non-coding upstream 2265963 14168131 ~ 14214816 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other downstream 1792678 10087275 ~ 10107285 (-)
G110605 NA other downstream 2339859 9545495 ~ 9560104 (-)
G110570 LOC106576073 other downstream 2900699 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 3105901 8783905 ~ 8794062 (-)
G110507 NA other downstream 3175611 8722388 ~ 8724352 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 115701 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 147326 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 169222 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 235014 12137182 ~ 12140405 (-)
AMCG00006641 mrps33,LOC106591474 other upstream 974124 12876292 ~ 12878656 (-)

Expression


Co-expression Network