G111148


Basic Information

Item Value
gene id G111148
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12759571 ~ 12770925 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU139201
CGGGCCGGTGCAGAGCGCCATTCGTGTCAGGGCCGGGGAGCAGACAGACGAGAGGCTGCCCTTCTCCTGAGACGCACCGCATGTTCGTGGGGAACCTGGTGCTAAATAATTTGCAGACGACCTGGTTCTGGGTCAGGGTGTTGTACGTAGCAGAGCAGCCACCCTCGCTGCGATCTATTGAAAGTCAGCCTGCAATCCAAGCTTTTGTCTTCCTTTCCGAAAGCGGGGAGGGAGCGGCGATGTG
>TU139202
CGGGCCGGTGCAGAGCGCCATTCGTGTCAGGGCCGGGGAGCAGACAGACGAGAGGCTGCCCTTCTCCTGAGACGCACCGCATGTTCGTGGGGAACCTGGTGCTAAATAATTTGCAGACGACCTGGTTCTGGGTCAGGGNGTTGTACGTAGCAGAGCAGCCACCCTCGCTGCGATCTATTGAAAGTCAGCCTGCAATCCAAGCTTTTGTCTTCCTTTCCGAAAGCGGGGAGGGAGCGGCGATGTG
>TU139203
CGGGCCGGTGCAGAGCGCCATTCGTGTCAGGGCCGGGGAGCAGACAGACGAGAGGCTGCCCTTCTCCTGAGACGCACCGCATGTTCGTGGGGAACCTGGTGCTAAATAATTTGCAGACGACCTGGTTCTGGGTCAGGGNGTTGTACGTAGCAGAGCAGCCACCCTCGCTGCGATCTATTGAAAGTCAGCCTGCAATCCAAGCTTTTGTaaaaaagaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139201 True 244 lncRNA 0.59 2 12759571 12760841
TU139202 False 244 lncRNA 0.59 2 12759571 12760841
TU139203 False 223 lncRNA 0.55 3 12759571 12770925

Neighbor

gene id symbol gene type direction distance location
AMCG00006640 LOC103371429,LOC103459365,LOC103382520,LOC101068332,LOC100696994 coding upstream 43406 12714480 ~ 12716165 (+)
AMCG00006638 kcna1a,LOC105912431,LOC105913409,LOC108279524,LOC103366871 coding upstream 106151 12651939 ~ 12653420 (+)
AMCG00006639 LOC107562148,LOC107741714,LOC105912408,LOC107687569 coding upstream 140624 12617517 ~ 12618947 (+)
AMCG00006635 NA coding upstream 219563 12530340 ~ 12540008 (+)
AMCG00006632 kiaa0930,zgc:172139,LOC107562136,LOC107687566,LOC107719873,LOC107699202 coding upstream 328527 12425206 ~ 12431044 (+)
AMCG00006646 tmem178b,LOC107725619,LOC107694293,LOC107655552,LOC107757211 coding downstream 112851 12883776 ~ 12888236 (+)
AMCG00006645 tmem178b,LOC106576670 coding downstream 167401 12938326 ~ 12954435 (+)
AMCG00006650 mkrn1,LOC107757257,LOC107549191,LOC107694290,LOC107725576 coding downstream 244728 13015653 ~ 13035434 (+)
AMCG00006653 NA coding downstream 265748 13036673 ~ 13037830 (+)
AMCG00006659 NA coding downstream 501572 13272497 ~ 13283101 (+)
G111063 NA non-coding upstream 406208 12350757 ~ 12353363 (+)
G111008 crebl2,crbl2 non-coding upstream 735022 12022810 ~ 12024549 (+)
G110930 NA non-coding upstream 966036 11793168 ~ 11793535 (+)
G110916 NA non-coding upstream 1087123 11671569 ~ 11672448 (+)
G110883 NA non-coding upstream 1409454 11349884 ~ 11350117 (+)
G111161 NA non-coding downstream 74998 12845923 ~ 12847502 (+)
G111240 NA non-coding downstream 583031 13353956 ~ 13357071 (+)
G111272 hmga2 non-coding downstream 687114 13458039 ~ 13502571 (+)
G111420 NA non-coding downstream 1365394 14136319 ~ 14137744 (+)
G111443 NA non-coding downstream 1540827 14311752 ~ 14312024 (+)
AMCG00006636 NA other upstream 107756 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 436293 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 3191295 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 4035505 8710750 ~ 8724066 (+)
G110445 NA other upstream 4582785 8175760 ~ 8176786 (+)
G111197 NA other downstream 240259 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 1162741 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 8166572 20937497 ~ 20944977 (+)
G112567 NA other downstream 8277411 21048336 ~ 21049038 (+)
G112600 NA other downstream 8371940 21142865 ~ 21203201 (+)

Expression


Co-expression Network