G111182


Basic Information

Item Value
gene id G111182
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12954610 ~ 12959628 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU139248
aacacaccaatgagattttattttgtacggTTTTACATTCCACAGttgaacattttctttcttttttttttaaatatatatatatatatttttaattttatttactcaACAGACACATTACTGATGTAAAAGGTTGACAGGTTCTTTATATATTCTTGATGAAAGTTGCAGTATCACTGTTCTCAAGTCTTAGCAGTAGACCCCCGTGTTCAGAGCGTAAGTATTTCCCAGTGTTGTGTAGTCATCCTATTTGGAGGCCACAAGGTCTTGCAGGAAACAACAGGTAGTTTTAGGTTTAAAATGGCCACAACCCACCATTCATTTTCAGGTTAATGAactgaaacatgtttattaGGGAAATACTACCTTACAGTGTGAATTTGTATCCGAAGTACACAAAGTTGTATGACGTTCTCATTCGTTTTCTCCATCAGCTCTTGTGTTTCGCAAGTTTCCGAAACGTATCAATCATACAACTTGATGAATATCTGCACTTGTTCACATCcactgcatatatatttaagtactTCAGTTTCATTTGGTAACTTTTGGGTGTAGATTGTGTGCTCTCATTGATTCATTTTCATCCTTAATTACCTGGAATTATATAATGTAGCAAAATATAATTCCAGATATAACAAAGAGGCTTGTGAGTTCTTACAATCACACAAACTCAATGGTTAGGCTAATGCTCATCAAGTGAGGACTGAAAAGCACACTGAACTCAGAAGTGCTTCTCAGATGAAACCACAGTGTACGTTCACTTCATAATAAACGGTTGATTAGTCTCATCAGAAAACCTCACTCgcactttatacattttatactatTTAGTTGCTTAAATATCTCATGCCTACTACTGCCTcactgatttattattaataataataataataataataatattagcgTACACAAAAACCACAGACTTTTTAAGTACTTGCATGATGTCAGCAAAGGTTAAGCACAAAGTCTGTTCTTATAAAAGCTGAAAGGGCGATGTGAGTTAATGGAGAAACCCACGCAAAGGTTTTTTGCTACTGTGGTTCTCATCATTTCCTAACAGAAGCTGAAGGCAATCTTCCGAATATGGGTCAGGTTGAAAAGGAGTGATGTAAAGACTATTTTGGGGGGGGATGACAGCATTTCAATTGAATGGCTCAGAAAATTCAGTTATGCACACATTCCATCGAATTAGTTTCACAAACAAACAGTCGGCAAAGCTCGTGAGCTGAAGAGATGCCCCTACCACGATGCTTTGGAAAATGTAATGCGTTTGTTTGACTGGTGTGTAGATTCGATTTATTGATTTCTGTCTAAATCCAAACCGCTGTTTTACCGCAAAGTATTTCTACAAAGTAGCCAGAAACTACTctgacaaattatttaaaagcgtGTCTCTCTTGAaggtaataatatatattttaaacatctcTGAACTATCATCAACAGAATggcatttaatttgttcagaCTGTTGTATTACCATGCATGTGCTTAACCCGTTAATAAAACAAGACGGCCTTTATCTTCAGTCTGAGCTTccagggaaaaaatatatattgcaaaggGTATGTGGAGTGTGTCTGGCATAATTATACCAATTTCATGCCCAATTGAATTCTCTACCTGTTTTAGCCTTGAAGGAAAACCTTATTATATCCTTGCAGTAAGGTACGAAATTAAGAGGAAGGGATTTCTAAAACAATCAGTTTACCTCATTTAACTGCTACTTTTACCAACCTTTATTTTTAGTCTTACTTTGCTTTTGGCTTGGGGGctgaaataaaattgattattgtattaatttgacaggaaaaaaaaagaaaataaattgctgtTTGAATCTTGGGCTCTAACGACAACCCAGTCATGGTAAACTAATTCAATGTTGAATGAacatataaactaaatatattccTGTGTTTAAAAGTCTCACGCATTACTGTTTTCCTAGAAATGACAAGCAGAagtttcatatacatatacatatatatctctGCCTTGCTaagtggactggactggattggAGATTTGTTTTAGGCGCTCTTTGTCAGTAAAGAATACACGGATATCTCTATCGTTGGccggaattaaattaaattggttcTGAAAATGGATGAACTGGTTATGTGGTCATTTTcccacagcaaaataaaaccactgcTGGATTAATATTGAATTCATCTGAGAATGAGgtagaaattaaacacaaacacacacatctatatacaACATAATGATTTTACATCCTTTTGTGGTGGTTGTTGAATTGAATCGGACTCCTTATTGCCGCCACAATTGTGCCTATTCTGTGGCAAGTGGTTGTATCACCTCAAACGTCTACTCACTACTGTAATGTGCGGATGTTCCTACAGTCACTGTTCATTTTGGCCATGTAGTATTTTCGGGATGTCTATAAATGTGACGCAACAGGGGTTAGGGGGTCTACCCTTTGGACACACTATGATGTGAGCTAAAAGTGTAAACTGTTTAATCTTTTGCATGTCACAGAATATGATGCCAGCCTGGACACTGAAATACAGAGGTTGCTGCCACAGACAGCACTAATTGGTAAGCAGTGGCACGGAGAGAAATCTCTAAATTACTCCAATATCTAATAATCTTGGTCAATTACTTCCAGAAAAGATGGATATTGTCATTCCGTGCAACAAAACATACGTACCATTATATCGAGAGCTTTGTATTAGTGAAGTGGCAGAGGTCAATGTGTTAACATTagctgggggaaaaaaatcccaCTTCAATGATCAACTTTCAgtctttctttcagtttagTGAATATTTCAAATAGCAACGTAGCTTCAACTTTAAATTGGAAACTGAACACGGGAAGGTAAAAAGCAGCATCGATTGCCTGCAAAAAGAACATTAGTTTTCTCCAATATCAGACTGAAGGATCGCTCATGGTATTTtaagtctgtttatttatttttcgtttaattttttttgtcctttttacaTGAGCTTTTCTTATACAGTGTTGCTGATATTCGATGTTTTCCTAATATTTAATTCTGACTTTCACCATAAGCAATTCTGATTTACAAATATTCCTCAGCAGTTAAGTGTAGCTCATCTCTCCACCAGTGAAAGGATCTATATGGGGGAACCTTATGTCTGATGTGTTATGAAGGTGAGCCAGACTTTATGAATGGGACACATTTCCTACAAACACCAGTGCATGGGAGAGAATAGCTGTACATTCAATTGCAATGGTGACAGATTCTTCAACTGAAGAGAACACTGACTATAATATCTCATGTAAGATCAATTACAAGGAAACATAAGTTGAGATGAGATCAATAAACATTGGGAAATACTCACAAAACCCTTTAAAATCCTGGATAGGAATTCTGGAAAAGGTTCAAATCTGAGATGTAACCGGAATTATGATTCCAGGATCCATAATTGTCTGTTTTCCCAGTAGCAtctagatttatatattttttcagaaacaatATCAGTCTTTTTATACCCAACTCCCCAGGGAAGCACGAAAAACAAACTCCCATCAGATGTAATACTTATTTCCTCACAGACGTGCCAGATGAGGGCAGATATCGTGTTGAAACTTTTTTCACAATTCTGTCAGAGCATTGAATGCCAAACATTGAGGAAACAGTGAACTATTTGGTTGTGTAAACAGGATACTGCATCTttctaatgtatgtattttttttctttctttgagaTAGGTCTTTAATTTTTTacaactgatttttatttttctacagagACTGTAAAACACCCACACTCAGTTACCTCTATGACAATGGTGGTGATGAAAAACGTCACACAACCaagcgcgcgcacacacacaggactgatttacaaataaaaaaagagctaaaatgaacataaataaacaaatatcggtcataaaaaaagaaaatacacaaaaatgcTGTTTCCAAATAGGATCTGGAAGAATGGGATTAAATCGGAGAATGAAAACCTTTGTACAAGTAATTCTGACGTTGCTTCTTGTATCTCAGTTTATAttctttacaatattatacaagCCCAGAGGTACATTATCAGGCAGATGATCGACTCCAGTCCCTCCAAGTGAAGAAGAGGACCCATCAAAACGCATCGATGATTCATTCACTGCAGAGCACGCCTAAGGCAGCTTGAAAATTACCCAGGTATTTTCAGTAAAATGGATTTTGTCTTTTGACTTTATGTTGCTCTCCCCCATGAAAGAGAAtcgcagaaagaaaaaaaaaatgaatattacaCATCTGTCAGTGAGGGGGAGTTTGAGTTGCTTCAGGCCAGCAACACATTTTCCCATTTCCCAAGACCGGTCATCCTTCCATATTTGACACCATTTGCTTTGTCTTCTTTTGCAATGATGTTCTCTCTCATCTTTTGAAGAAGTGAATAAGTTATTTGGATTCAGGAAACCTGTCTGATCAGTCTTAAGATTATTCTGCACACCCTGTACGATTTTAGGCAACAGGAGGGCAATCCACACCGAGTGGTGTGCACCAAAAGACAGTGTGAACACGTCCTGAACTCCTTGTTTGTCTTGCAACGTTAATCCTCTTCATAATTTGCCACTGCAGTGCTGGGCACCCGACGAACACTTTGGAAGAGCAAAGCATTgctctgcttaaaaaaaaaaaggtgtatattcatgtatttatttatctatacagcttaataacacatacattaatCAGTCTGTTCccttgaaatgtatttagtaTATTTTCATCACGCTTCTCTCCAAAAATCGTTTTGCAGACCGACCTGGACCAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139248 True 4793 lncRNA 0.36 2 12954610 12959628

Neighbor

gene id symbol gene type direction distance location
AMCG00006643 braf coding downstream 82055 12859177 ~ 12872555 (-)
AMCG00006644 NA coding downstream 102826 12849007 ~ 12851784 (-)
AMCG00006642 LOC103363517,LOC104927640,LOC108425352 coding downstream 152709 12766012 ~ 12801901 (-)
AMCG00006637 arhgap8 coding downstream 393174 12547795 ~ 12561436 (-)
AMCG00006634 nup50,LOC107687567,LOC107601009 coding downstream 509760 12433023 ~ 12444850 (-)
AMCG00006647 NA coding upstream 1541 12961169 ~ 12987800 (-)
AMCG00006649 NA coding upstream 31175 12990803 ~ 12991381 (-)
AMCG00006648 NA coding upstream 38821 12998449 ~ 13024022 (-)
AMCG00006651 NA coding upstream 81472 13041100 ~ 13049320 (-)
AMCG00006652 rergl,rergla,LOC107560713,LOC107757225,LOC107594299 coding upstream 97260 13056888 ~ 13061928 (-)
G111158 NA non-coding downstream 193774 12759571 ~ 12760836 (-)
G110957 NA non-coding downstream 1052442 11899963 ~ 11902168 (-)
G110942 NA non-coding downstream 1158268 11794536 ~ 11796342 (-)
G110940 NA non-coding downstream 1161109 11790052 ~ 11793501 (-)
G110939 NA non-coding downstream 1165376 11788940 ~ 11789234 (-)
G111389 NA non-coding upstream 1044125 14003753 ~ 14004141 (-)
G111421 NA non-coding upstream 1176700 14136328 ~ 14137746 (-)
G111448 rap1b,LOC106576640,LOC107695907 non-coding upstream 1208503 14168131 ~ 14214816 (-)
G111451 NA non-coding upstream 1223153 14182781 ~ 14299856 (-)
G111466 slc35e3,LOC106609860,LOC106576641,LOC107737854,LOC107710682 non-coding upstream 1284974 14244602 ~ 14246174 (-)
AMCG00006641 mrps33,LOC106591474 other downstream 75954 12876292 ~ 12878656 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 814205 12137182 ~ 12140405 (-)
AMCG00006622 lrp6 other downstream 824227 12071390 ~ 12130383 (-)
AMCG00006621 borcs5 other downstream 884950 12049494 ~ 12069660 (-)
AMCG00006618 crebl2,LOC102781596 other downstream 930061 12017869 ~ 12024549 (-)
AMCG00006663 hmga2 other upstream 495804 13455432 ~ 13503228 (-)
G111489 NA other upstream 1400600 14360228 ~ 14364422 (-)
G111621 NA other upstream 1752389 14712017 ~ 14753970 (-)
G111767 LOC107575789 other upstream 2793193 15752821 ~ 15753235 (-)
AMCG00006719 NA other upstream 2921502 15881130 ~ 15896869 (-)

Expression


Co-expression Network