G111240


Basic Information

Item Value
gene id G111240
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13353956 ~ 13357071 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU139325
actttattaaaaagtGTTTGAACACTGGGCTCCACTTTGCTTGTATTCATAatagaaaacacattaatttgctttaaatttCTTAGGTTTACACACCACAAAAGTCGTGGACACTTCTGTTGTCGACCCATATGGCTTAAAGTTTCGAAAATGGCAGTTCAGTGAAGAATCCAACAGCTACATTTTACTGCCTGACATCGGCCTCACTAATGCACAGGAGCTCATGATGCCTTAAAGTGCAGAACGAGTCGCCCCTGATTCGTGAAGGGAATACTGCGAGTGCTGgagctaaaaaaaacaaaaaatcactaGGAAAGCAGGTGGCTGAGCGGAGCTCTCATGCCCAGCCGTGGGGTGCTGTGTTCACAGTGTTGCTGCTCACAGGTACAATCCTGTGCTAAGGATCCTGTATGCCATGGAAATTGTGGCCCCCATGCCAACCACCCAAGCCAATGCCCTGCTAGGCTGGGGCAGGGGGGTCAAATAGGCAATAGTATGGAAGAACCTGGAACCAACAAAGATACGGAAATGGAGCAGGGCAGTGCGGAGGTCCGGACCGGTCAGGGCGTACAATAGTCCGATGAGCACAAAGGGCAAAATGCTCTCCATGTCATTCAGGTGGCCTCCTAACGCGTTCAACATCCGGATCTATGCGGAGCATCTTCTTTTGGTCCTCCAATTTCTTGCTTTTGAGAGAAACGTCTTCAGGGTTAGCAAAAAcTTTCTTGAGAAACGGAAGTAAGCGGTTATGGGTCCCATGAGCAACATCTTCAGGATCACAATGGTAGCATAGCTGGTGAAGGCCAGGAACACCTCACTGTCGATCATCTGGGATATCTCTGCCATCTCGCCGCTGTCCTGCTACAAGACATGGGAGGCCAGAAATGAGAATTGCCATTGCACTGAAATGCAAACTGCCTGGAAAACCTTGACATCCCAAATGGGTCAGGACCATGCAGTCAGGCAACAGCCAGTTTTCATCACAACTTGTCCTCCCTTTACTATACCCTAATCTTAAACACTTGTGTGAGTAAATGTAGGGAGAATCCACAGTAACACTCATAGTCTTGAAGCAGGAAAcgtagcagaattaaaaaagggTGCACAAAACCCCAACCAAGGACTGTTTCATGTTTGGTTGAACAAGTGTAACAGACGcctttttcaaatgtcattCAATGTAGCTCTCTAACACAAGTCCTTAACTAGGTTTGGTTGTCAATTCATTATTATAGTCGGAGACCATTTCTATCATAACCTCTCAACAAGACggtgtaaaattgtatttgaaccTCTCAGAGCTTTATAAAAGACCcgtatattaaataaaagacagCAAGTCTCAGAGTCG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU139325 True 1351 lncRNA 0.45 3 13353956 13357071

Neighbor

gene id symbol gene type direction distance location
AMCG00006656 LMO3,lmo3 coding upstream 29239 13283154 ~ 13324717 (+)
AMCG00006659 NA coding upstream 70855 13272497 ~ 13283101 (+)
AMCG00006653 NA coding upstream 316126 13036673 ~ 13037830 (+)
AMCG00006650 mkrn1,LOC107757257,LOC107549191,LOC107694290,LOC107725576 coding upstream 318522 13015653 ~ 13035434 (+)
AMCG00006645 tmem178b,LOC106576670 coding upstream 399521 12938326 ~ 12954435 (+)
AMCG00006655 NA coding downstream 7528 13364599 ~ 13379831 (+)
AMCG00006665 LOC107594874 coding downstream 222522 13579593 ~ 13592716 (+)
AMCG00006666 NA coding downstream 250912 13607983 ~ 13609375 (+)
AMCG00006668 NA coding downstream 265923 13622994 ~ 13634454 (+)
AMCG00006667 NA coding downstream 283068 13640139 ~ 13668688 (+)
G111161 NA non-coding upstream 506454 12845923 ~ 12847502 (+)
G111148 NA non-coding upstream 583031 12759571 ~ 12770925 (+)
G111063 NA non-coding upstream 1000593 12350757 ~ 12353363 (+)
G111008 crebl2,crbl2 non-coding upstream 1329407 12022810 ~ 12024549 (+)
G110930 NA non-coding upstream 1560421 11793168 ~ 11793535 (+)
G111272 hmga2 non-coding downstream 100968 13458039 ~ 13502571 (+)
G111420 NA non-coding downstream 779248 14136319 ~ 14137744 (+)
G111443 NA non-coding downstream 954681 14311752 ~ 14312024 (+)
G111531 NA non-coding downstream 1271655 14628726 ~ 14632980 (+)
G111562 NA non-coding downstream 1379131 14736202 ~ 14737639 (+)
G111197 NA other upstream 310508 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 702141 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 1030678 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 3785680 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 4629890 8710750 ~ 8724066 (+)
AMCG00006672 NA other downstream 576595 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 7580426 20937497 ~ 20944977 (+)
G112567 NA other downstream 7691265 21048336 ~ 21049038 (+)
G112600 NA other downstream 7785794 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 7908182 21265253 ~ 21304878 (+)

Expression


Co-expression Network