G111452


Basic Information

Item Value
gene id G111452
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14290467 ~ 14295549 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU139585
AGCAAACTACTCAAGTTGTACCCTCACCTTCCAGTTGTGCAGATTCAAATCTCAAATATAATCCTTTTAGAAGGTTAAAAGGTGTAAAACTTTATAAATCAACTTACATTTGTGGCagttttggtatttttaatattttgtacagCCAAATGAATGCTGCTTCCAGATCAAAACTTGAGATCACCTCGTCCCCTTACAGGCAGGACTGATGTAGACGGGTGTCCTCCAAGCCACTGTATTACCAGAGCCAGCCCATCTAAAGACAGCACAAGAAGCGCAACTTCCCTTACACCCCCCACAGAATCTTCGGCTACTGAAAATAGCACTTTAACCCCCATAatggtttgtctttttttttttttttttagcagcatttgttgtgtttttgtggtattgaaattaaatatgaattgccCAAACTCAATCCTTACACAGCGAGGTTTCATTGAGAAGATTTCACCCATCTGCATTCTGTCCCACGTGTACTTGGAGACATTTTGATCAGTTGCATTAAGAATAATGGGGCGAAGCACACCGATTCTATATACATGTAAACGCATATACATGTGAATTGCCTGACAACTAAAGGGTGCTATACCACCAGAGGTGAAGCAGCACACATAGTTTTGCCAATATGGCAGTACCCGTGTCTCCTCTCCTACACAGCACAACCAAGCGGTGATGGGGGCCGTCCCAGTGGTACAGTTGGCCATAGCAAGCAAATGACTAAGGTGGGATGGAACAAAGACATTGGTTTTCAAAGTTGAACCAATAACAATTGAGTGGTTTCCTTGCTACAACCCTGTACAGAATCATGGTTTCAAATAACTATGAACATGCCGACAAACTAATACTGCACCCCTCAAAAACAGGCAAATAAAaccagatctgcagaaatcacGAAACCTTCAAAGGCTATTGTTCCTAACAATACTGCACAACCTCAGCCTCTGGTTACAAAATGCACAGGATAACGGCTGAAAACTACAAACCAactgaacatttcaataattgaaatgtgcgcttttgaaaagcaaacatttcacCTATATGCTTGTATAGCTATATGGTCaagaatgttacattttaaatagtctgGCAAAAATGTTGTACAATTCAAACACTGATTTGGGGTTTACAGGAAGCGATTAGATCACCTTTTCCACGGGTAATgatttgttaaaatgaaagacGTTAATGCCAATGTCACTTCATACAGGCTTTGTCAAAAAATACACCCAAAACTGGGGGTCAATAATTTCTGGATTATGACATGGTTCtgtcaatgaaaatgaaagcattaaGGCAGAAGGCAGTTCTCCCATCACTTTTAGGTACACACAAATTATGCAGATTCTCGACATTAGATTCCTGTTACAATCTAAATTACACAATCAACCCCAAACGTTTATCCCCATGACAGGGTGAAAATGAGATGTCATGAAATGAGGAAACAGATCTTCAGAATTATAAAGTGCTGTTTAACATTTCAAGATGTGTTTTGTTGATGTAACTGACTAcagttacagtatttttaaaggttttaattaaGACTTGGTaaactacattttgtattttttaaatcattactaTTTTACACATAATGCAATAGGTTTCTTGAATAAAACCAGTTTAGTTTTAACCCCTTTAACATTCTAGGAAttaacagtaaaatgtattacagcaAGAAAAACCTGCCTAGTATGCATCTTTCTATGATCCCAAGGTTTaggatatttaaaatgtccctTTCCCAAGACTTGCTGCCTTGCAATGGAACAATATTAAATGCAGTACTTTAAATATGAACACTGAAGTGGTGTACAGCTCAGTATTcacttaatacaaaaatacccAGACACATACGGAAGACTACATCGAGTTTTAAGTGCAAAATATtaccattacattttcaagaatcATTCAGTGGTAACTATCACATCCTCATTATCTTTTGACAGCTGAGAATGGAGCTCTTTGAAAATGCAAGAGCTAACGAAGCCTTTTCAGCACTTCATTAAGGACACTTTCAAGGTATGTACTGTGGAGTCTTTTGCAGATACCGAGTTTGAACAGTTACCACAGAATGACCTTAATCATAAAACACTCCACGCTATAAGACCTCAGCAATGCAGAAATGAAACAATGTGCATGGAATTGTtcagtacaatattttaaagatgtacaACACAGCTATGAACTGGACCTACAGTAGTCCCTTTAATGTACCCAATTTTTTTGCAGTCTGTAAGTACttaaaattaacaatgtaaatacaatttcttTCCCAGCCCATCATTACAAATTCCCAAAATTAAATTAGCTTACTGACAGAAGATTTTAATACTGTGGGAGTTTTTGGCAGAGGGGGGAAATTTAGGGAACTTTTAAAAGAGTGGCATTTATAAGCAACAGTCTGAAAGCAAGACAAAggaaacatacatttcacaaaagaAAGTCTTGTCAAACTACTGTTAAATATgtggtgtttaaaaaataaaataaagtattgtgTATGAACAGTCTAAAATCAGAACCCCAAAACTACTAGCAAATGTTAGTATGAAGTGTGAGCTGAAGAGTATTGAAACATGATTGTTAATTACCTAAATTGCAATGCACCTGTAGTTCAGTCTATAGCTAGTAGATTTCACAAGCTTGTATATGtccattcaataaaaacaagtgCATTAATTAGGAATATCCAGAAAACAATGAACAGTTTAGAGCCTGAGAGAATTTGGTTTAGTTTACAAAGCAATCTTGCTTGAATCAATGTAAACTATTTACTAAACATTTCCATAGCCAAACTACTAGAAGGGCATTTAATTGTGAATAAGACAAATTCAATGTATAACAGTCCTGGAGAACCTAAAACTGTCTCaactgaataatattaataggcTTTGGCATTTCTAGTCGGTCTAAGAAtgaacgaaaaaaaaaaatccagggTAGTCGTCATACAgaaactatttaatttattaaagtaaCAATTGTAGATTCACAATAACTACTTTCCAAAGTGTTTAAGGCACAaacgccccccaccccccccccccaaaaaaaagaaaacactagCTACATATTTTAAGCATTTGCAGATTTTTTTGCAAAGGCCAGATAGACGTAAAAAActcaagtctttaaaatcacGTAGTGGTTTGTAAGACACATTAGAAAATTGAACTACGTACAACTGAGACTGTAATATATGAGCAATTGAATCTGAGGTAGTTTGGGCACTAAtcctaaacaaaacaagtatgGCTTCATACATAACCTATGCtcataaagtttttttttttcctttaaacaatAGTAGGCATTCAATGATTGACTGAACACTTTTCCAGTTACAATTTACTGAACTTACTACTCTTCGTAAGTTCAGTTTCATTTTtcgtatgttttttttttttttttcagtacaacatgagggagaaaaaaaaaaaaaactgaaaaccaaaaaaaacaaacaaaaaaaggcaaaagcaaACATATTTGAAGCTAAAGCACATATACAGACAATTCCACAGGTAGCAACAAAGCGAAGACAATGCTTTGGAGCATGCAGGTGCACAAACAAATTTAACTGTACACTAAAGAGATCTTGAGATTCAATCATCATTTCCCAAAAAGGTATATAGGGggtgagaaaaaataaaaatcttacaatattaaaacataccTACCTGTACCTACCAAAACTACCACAAACCACCTGAGGCacactgtgtgtcctgcagtggCTTCTTTTGAACCTCTGCCTTTTCTCCTAGAGGATGAAAGAGGTCAGTATGTTCAATGGAGAAAACAAGAAGGGCCAATATACACACCTTCCCTAGCGGTGGCGGTACTCCCTCTCTCGGTCCCTCTCGCGGTCGCGGTCTCTGTCTCGGTCGCGGTGTCTCTCGCGCTCCCGGCTGCGTTCCCGGTAATAGTCGTCGTGGCGGTCGCGGCTGCGGGACTTATGCCGGCGGCTCTTTTCCCTGGAGCGGCTGTGGTCCCTCTCCCTGGACCTCTCTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139585 True 4030 lncRNA 0.37 2 14290467 14295549

Neighbor

gene id symbol gene type direction distance location
AMCG00006681 NA coding downstream 19776 14252185 ~ 14270691 (-)
AMCG00006678 NA coding downstream 136135 14139065 ~ 14154332 (-)
AMCG00006676 NA coding downstream 157380 14130780 ~ 14133087 (-)
AMCG00006675 NA coding downstream 166709 14120438 ~ 14123758 (-)
AMCG00006677 NA coding downstream 187397 14101422 ~ 14103070 (-)
AMCG00006687 NA coding upstream 70093 14365642 ~ 14366487 (-)
AMCG00006690 LOC103382512 coding upstream 80779 14376328 ~ 14388386 (-)
AMCG00006695 NA coding upstream 291200 14586749 ~ 14632771 (-)
AMCG00006696 NA coding upstream 349058 14644607 ~ 14665799 (-)
AMCG00006698 NA coding upstream 513312 14808861 ~ 14818516 (-)
G111466 slc35e3,LOC106609860,LOC106576641,LOC107737854,LOC107710682 non-coding downstream 44293 14244602 ~ 14246174 (-)
G111448 rap1b,LOC106576640,LOC107695907 non-coding downstream 75651 14168131 ~ 14214816 (-)
G111421 NA non-coding downstream 152721 14136328 ~ 14137746 (-)
G111389 NA non-coding downstream 286326 14003753 ~ 14004141 (-)
G111182 NA non-coding downstream 1330839 12954610 ~ 12959628 (-)
G111478 NA non-coding upstream 16178 14311727 ~ 14312024 (-)
G111481 NA non-coding upstream 41152 14336701 ~ 14374310 (-)
G111622 NA non-coding upstream 433422 14728971 ~ 14730469 (-)
G111626 NA non-coding upstream 437621 14733170 ~ 14734171 (-)
G111630 NA non-coding upstream 499169 14794718 ~ 14794949 (-)
AMCG00006663 hmga2 other downstream 787239 13455432 ~ 13503228 (-)
AMCG00006641 mrps33,LOC106591474 other downstream 1411811 12876292 ~ 12878656 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 2150062 12137182 ~ 12140405 (-)
AMCG00006622 lrp6 other downstream 2160084 12071390 ~ 12130383 (-)
AMCG00006621 borcs5 other downstream 2220807 12049494 ~ 12069660 (-)
G111489 NA other upstream 64679 14360228 ~ 14364422 (-)
G111621 NA other upstream 416468 14712017 ~ 14753970 (-)
G111767 LOC107575789 other upstream 1457272 15752821 ~ 15753235 (-)
AMCG00006719 NA other upstream 1585581 15881130 ~ 15896869 (-)
G112059 NA other upstream 3337342 17632891 ~ 17633445 (-)

Expression


Co-expression Network