G111489


Basic Information

Item Value
gene id G111489
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14360228 ~ 14364422 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU139625
GTTTTCCCCTTTTATGCAGGTTTTATTCTTTATCAAATAAGTCAATACAGTTGCCTTGATACAGGTACATTGATGGAAACAGCTACACTTGGAAGCATCTACACTCAACAGGAAGGCAGCGCCCTCAGTGGTAATAAATAGCCAAGCTGGTCCACGTCCTCTGCCAGCCCAGAGCAGGCCCCCACAATTCCTCCGACCCCCCACCCTCACCACACATGCAAGACACACTACAGGGTCCCGATGCTCTTAACAGGGGTGGTGGTCCGGTACTCGTTTGTGGCGCAGCCTTGATGATGTCATCCACGCGCAGGATCATCTCCGCAGCCTCGGCCGCGCTCAGCAGCACCTGTCTCTTCACCTGGAAGCTCTCTGTGATGCCCAGCTCGGCCATGTCGCCCACAGTGCCATCGATCATGTGAGCCCAAAGGTGGTCTTATTGTCCATGTGAGCCGCTCGAAGTTGGGCCACCAGATCTGCACTGTCATAGCCAGCGTTGTCTGCAATGATGGTCGGCAGCTGAAAGAGAATTGATTAGATGATCCTCCCTCATGAGAAAATGGTCTATCCTCATTACTACAAATAGCTTTACATCCAGGGGAACAACAGACAAAACtatgtacaaaataagcagTGAACAGCATTGTTAACAAGCAAATAGATCACCAAGCTACAATTTTAAGATGcaattaaatcttaatttatgAAGTGAGTAGACCAGCTGCTCACTGCATCGCTTAGGGGTTGTGCATTAAAACCCTGCTGATCTTTTACCATCCCCCAAAAGATCGAGTGGGACTGAGATCTAGATGCATAGCTGTGAACATGTATGGTTTACGGGTCACTTAAACATTAACAGCCCGAAATAGCACAGTAAAGTGAAGACATGAGCTACACTCAGATCCTCACCATTCGCAGCGCTTTGGCAAAAGACTCCATGGCCACAGCTTCCTTGCCAGGGGTTCTGTTTGCCAGGTCTGTCACTACATTGGCCATCAGCATCTCTGAGCAGCCTGTGGAAAGGACACGAGAACAGATGAGCAGACTGCTCTCACCAACAACCCACAAGCACAGAGACCACGGCATTGGGTTCACACAGCTACTCACCTCCACCAAACACTGTCCTGGTCTCCTTGATGGTCTGGGCGAGGACGCAGAGGGCGTCGTGCAGAGATCTCTCCGCCTCGTCCAGGATCTGCTGTGTGGCTCCACGGAGCACAATGGTGCAGGCCTCGCCTTCAGAGAAACACAAGAATGACTCGCAGCCCTGCAGAGCACGGCAGCCCCTGCCTCCCACCAGTAAAATCACACTGAGATTTCAAAGAGAACACTTTAAAACCgaaatgtctgtgttttaggAAAATATTCACTATTAATGGCTAATAAATCTACAAGCAAAATCTCAGCGTAGTGTAATTCAGCATATTCCAGGCAAATTACGGTCAGGCTTACCCATGGCCACCCCCGAGAAGTGGATCAGCTTGTCCTCTCCAATCATCACCTCTTCAATCAGCTTGCAGCTGCCCAGCTTCACCAGCTCAGGGTGGTCGAAGGTGGAGGAGATTTCTCCCCCTGACAGGCGGACAGTGTTACAGGACACGTCACTCTGATGCCCACAGTTTAATACACAAGATTACTTTtgaaaaaaactgcagttttcCTAATCAAACTATGATGGCTGTtgtccctcctctcctctccggCTGTTTTAATGCTGAAGTGTGTTTATAGTATACTGGTGCAGAGTCATTACTGTATTCATTCACAGGGGTTTCAAATGGCTGCAACCAGGCTGTTATTCTATTAGGATTTAGTCCAAAAATCAAATTGCTTCCTAAACAAGGGAACATTGCAACACTTCAAAATTTCCACTGACTGCACACTTGTGAAGGACGGGTTTCTGTTTCTTATGCAAGAGTGCTTACCTGTAACAAGAGCTAGACGCTCAACACCCATAAAATCTGCATGTTCAATAGCCATGACACCCGCCGCGGCAAACATCTGCTCAGGGTAGTTATAGATGAGCTGCCTGTGAAACAAAGTTACAATCATGCGGCTTGAAGGAACTCTGAGCTCAACAATTATTTTCCCAGGAAAGCACAGAGACATTACGCATGAGCTGCCGATGCCGAGAACTGGTTCACTGCGACTTTGACACCATACAGTCCCATTCCCTTTTATAGGCACACTGTCACTGAATAGTTTGTCTACAGCACGAGTACAGTAGGAAAAATGTTACTTAAACTAACAATCCAAATTCCCAAACATGAACAGCGAAGGGAACACGAGATAAGGTTTAAACGCTCAGAGGACTACAGGGCCGATTTTTGGCCCAGACTTCCACCCCCATTTTAGCCTTAAAAATTCTACATAGCAACAAGTCTTAACCATTAGGAGAGAGGTTTGTTGTGAGtattaaccaatcaaaaagcttttaaaacagtattgtttttattggttaaaaaacCCATCTCTTAGGGCAGATGGCGACATGCTGTGCTCACTAAACGAGAGCGCTTTTAACTGCGTCTGAGACTAAAAAAATTGGTTGATTAAGTTTAATCATTGTAAACTTCATTGGGCACATTTTTGGGAGGTAGAAGTTCAACACGAGAATGTAAATGGGAGGGGGTGAAGGTACCGAGTAAGaagtttctagtttatttcagatGGTTaacctaaatgtcagaatccccCCTTTCAACCCAAATTAGATAACCgctaagattaagaaatacacagaatcATTAGTCCAAGATACACGATCGTCCGATTTCTGGAGAAAACACATCGGCACCTATTAAAACATACGCGTTTACAATCATTGCAAAGTAAGCCATGTACATTAATTGTTACGATTAaattactggtagtaataacgaCAAGTACATTCgaagatgcttttatatttattcaatacagCAAAGTCCGACCGGCTGATttagtttgtgttgttttgcctGTAGTTCTGACAAGCTTCTAGACAGGTGCTCCTCACCAAACTGCTCCCTCTTGAACAgttatttgtaaacttttttttttgtattttaaaaataacattctggGGATTCGTATACATGATTTTTCAAGTATTTATAAGCCGGGATAATTTGGAAAATCAACATCGTTTTGAGAACAATGGTATCTGTATAACATAGgtttctttgctaatgcacatttctgtattaattccAAAACTAAACGAATTATAGAATGAACAACTTCAATGTCGTgatataggtttcatatgatcattacttaattttacagaaatataattagCTGTGCGATACCAAGCACTGTGATTTGTGCAAGAGCGCTGTAGTCCGGACGCGTAGAGCGGTCGCTGTGAGCTCAGTGCTCTGGGGGGTTTAGTCTCAGCTAGTTATGATTCatcatactttaaaaaaaatatatacatttcaaatagttgTCCTACCTGGGTTAGAACATAAAGATGCCTTTAAAGATGCTTAATAACAGTATTCGGTGTTGTgtgtaataaatcacagcatTAAAACTGATAAACATGAAGACAGGTTTTCAGTTGGCTGTAGGATCACTACAAGGTTCCCTCAGTGTATCCCTTCAGTGGCTTGAAACCTGGTCtgctaaaattaaatcaaaatgataaaacaaGATCTGTCAGTGGAGAGGTCTTGGCACATCGCGTACCTGTTAATGAAGCAGTTGATGCCATGCTTTAGGATGCGCTCCACCTTCTCCTTCATCTTCTCCTTCTCGGCCTGCTCAATCTCGGCAACCTTGGCGGTAGAATCGACACGCACCCGAGAACCAAAGATCTGAGGGACCGGACACACAAACATCACA

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU139625 True 3828 TUCP 0.44 3 14360228 14364422

Neighbor

gene id symbol gene type direction distance location
AMCG00006681 NA coding downstream 89537 14252185 ~ 14270691 (-)
AMCG00006678 NA coding downstream 205896 14139065 ~ 14154332 (-)
AMCG00006676 NA coding downstream 227141 14130780 ~ 14133087 (-)
AMCG00006675 NA coding downstream 236470 14120438 ~ 14123758 (-)
AMCG00006677 NA coding downstream 257158 14101422 ~ 14103070 (-)
AMCG00006687 NA coding upstream 1220 14365642 ~ 14366487 (-)
AMCG00006690 LOC103382512 coding upstream 11906 14376328 ~ 14388386 (-)
AMCG00006695 NA coding upstream 222327 14586749 ~ 14632771 (-)
AMCG00006696 NA coding upstream 280185 14644607 ~ 14665799 (-)
AMCG00006698 NA coding upstream 444439 14808861 ~ 14818516 (-)
G111478 NA non-coding downstream 48204 14311727 ~ 14312024 (-)
G111451 NA non-coding downstream 60372 14182781 ~ 14299856 (-)
G111452 NA non-coding downstream 64679 14290467 ~ 14295549 (-)
G111466 slc35e3,LOC106609860,LOC106576641,LOC107737854,LOC107710682 non-coding downstream 114054 14244602 ~ 14246174 (-)
G111448 rap1b,LOC106576640,LOC107695907 non-coding downstream 145412 14168131 ~ 14214816 (-)
G111622 NA non-coding upstream 364549 14728971 ~ 14730469 (-)
G111626 NA non-coding upstream 368748 14733170 ~ 14734171 (-)
G111630 NA non-coding upstream 430296 14794718 ~ 14794949 (-)
G111728 NA non-coding upstream 1173054 15537476 ~ 15537836 (-)
G111730 NA non-coding upstream 1193521 15557943 ~ 15558201 (-)
AMCG00006663 hmga2 other downstream 857000 13455432 ~ 13503228 (-)
AMCG00006641 mrps33,LOC106591474 other downstream 1481572 12876292 ~ 12878656 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 2219823 12137182 ~ 12140405 (-)
AMCG00006622 lrp6 other downstream 2229845 12071390 ~ 12130383 (-)
AMCG00006621 borcs5 other downstream 2290568 12049494 ~ 12069660 (-)
G111621 NA other upstream 347595 14712017 ~ 14753970 (-)
G111767 LOC107575789 other upstream 1388399 15752821 ~ 15753235 (-)
AMCG00006719 NA other upstream 1516708 15881130 ~ 15896869 (-)
G112059 NA other upstream 3268469 17632891 ~ 17633445 (-)
AMCG00006754 NA other upstream 3974848 18339270 ~ 18366562 (-)

Expression


Co-expression Network