G111621


Basic Information

Item Value
gene id G111621
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14712017 ~ 14753970 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU139783
AGATGGAGGACCACATATTTAGAGGTCTAATAGCAGGGTCGGTAATTGGATCAATCATAGTTGTAATTTCCTGTCTTGGAGCTCTTGGTGCATATTTAGAAACACAGTGGGTTCTGATTTTGtACCTAATTTTGACTGGTATTGGCTTGGTCATCCTGTTGATTTTTGCTGTGTCATTGTCCATCCTCAAGTCGGTGattCTTGATAGTGGACCATTCACTAACAACATGACAATGGATCATGCCCACAATACCACCAAAGAGTGGCTGGAAAGTGTGCAACAATGGGCAGAGTGTTGTGGATGGGAAAATGGGTACCAAGACTGGGGGCAAAACATCCCAGACTCTTGTCTCTGTGATTCGAATGATCCTGACAGTCCAAAATGCCACAGTGTGTCTAATCACACTGTTGGGGAGGATGGCAGTTCTGTTTTGTCTTCAAAGGTCATTTTCAGTGAGccCTGTGCTCTCATCTACATCGGATACATGGAAAACTTtgtgaatgtaattattggAATATATTGTGGCTTAGTGGTCATTGatgtaagtgtttatttttttatttacctta
>TU139784
NNNTTAGGGTTTGAAAGgctttgctgttgctgttttagTATAGTTTCTCCCGTGTATCAGGATTGTGACAGTAAAACTTCATGCCCTGCACTACATCGTGTTTGTAGACTCTGTGCTGTGATTTACTGAATTGTAAAGAGAGAGAATGTAACTTGTTTCACATCTGTGTCCTGTGGGTGCTCCAGTGACCGTGCCAAGAGTTGTAGGGTGAGGTTTGAGGTTCCCCTCCTTATTGAATAAAGGGGTGTCAATGCTTTGGGGGTTTAGGGTCACTCTCGCTTGTAACCAATGCCCTATATTGAAGTGGTGGAAGTTAATTTCCTGCTTACGTATCAGGAAATCTTCTGTGTATAATAAATGCCCTTTATTATGATGTCTGTTCATTACTAATTGTGCTGATCTTCATGTGCACTTAAATTCATATAAAGGCTGTCTTGTTAGAAAGGAAACGCGATCTCTCTGCAGCGACAGAGACACACTGTTATGGTGCATGCCCGAGGGAGAGGAAAGCGCTGTTGTTTGGGCGATGTCATGTTTCTCGCTTTCTGATCATATATTTCAGATGAATACTCGTTCTGTGAGGAAAACACAGGGCTGTAAAGTGCTGAATTGCATCACTTCTGACCTCAAGAAATGGCCACAAGGGTCTTCCTACTCACCCCGGGAGGAAATTGCATTCTATCGCTGCGTTTCTATATCATGGACATCTTGACAGAAACGATGATCTCAGTCTTTagcaactgaaatgttttcttcaagAGCATACCTTGATGTATGCTAATCTAATTGTATTGTGGACTGattgtaatgtactgtattatgtaatgcttttaaaacatttgttttcttatgctGTCTACCTTcacctgggtaagggcatctgaaggact
>TU139786
AGATGGAGGACCACATATTTAGAGGTCTAATAGCAGGGTCGGTAATTGGATCAATCATAGTTGTAATTTCCTGTCTTGGAGCTCTTGGTGCATATTTAGAAACACAGTGGGTTCTGATTTTGTACATAATTTTGACTGGTATTGGCTTGGTAATCCTGTTGATTTTTGCTGTGCCATTGTCCATCCTCAAGTCATCGattCTTGATAGTGGACCATTCACTAACAACATGACAATGGATCATGCCCACAATACCACCAAAGAGTGGCTGGAAAGTGTGCAACAATGGGCAGAGTGTTGTGGATGGGAAAATGGGTACCAAGACTGGGGGCAAAACATCCCAGACTCTTGTCTCTGTGATTCGAATGATCCTGACAGTCCAAAATGCCACAGTGTGTCTAATCACACTGTTGGGGAGGATGGCAGTTCTGTTTTGTCTTCAAAGGTCATTTTCAGTGAGccCTGTGCTCTCATCTACATCGGATACATGGAAAACTTtgtgaatgtaattattggAATATATTGTGGCTTAGTGGTCATTGatgtaagtgtttatttttttatttacctta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139783 False 570 TUCP 0.41 7 14725651 14753970
TU139784 True 890 lncRNA 0.41 2 14712017 14713959
TU139786 False 570 TUCP 0.41 7 14725651 14753970

Neighbor

gene id symbol gene type direction distance location
AMCG00006696 NA coding downstream 46218 14644607 ~ 14665799 (-)
AMCG00006695 NA coding downstream 79246 14586749 ~ 14632771 (-)
AMCG00006690 LOC103382512 coding downstream 323631 14376328 ~ 14388386 (-)
AMCG00006687 NA coding downstream 345530 14365642 ~ 14366487 (-)
AMCG00006681 NA coding downstream 441326 14252185 ~ 14270691 (-)
AMCG00006698 NA coding upstream 54891 14808861 ~ 14818516 (-)
AMCG00006702 NA coding upstream 151578 14905548 ~ 14927342 (-)
AMCG00006706 kcnc2,LOC103383062 coding upstream 810629 15564599 ~ 15574755 (-)
AMCG00006707 NA coding upstream 873246 15627216 ~ 15631171 (-)
AMCG00006711 NA coding upstream 932722 15686692 ~ 15691047 (-)
G111481 NA non-coding downstream 337707 14336701 ~ 14374310 (-)
G111478 NA non-coding downstream 399993 14311727 ~ 14312024 (-)
G111451 NA non-coding downstream 412161 14182781 ~ 14299856 (-)
G111452 NA non-coding downstream 416468 14290467 ~ 14295549 (-)
G111466 slc35e3,LOC106609860,LOC106576641,LOC107737854,LOC107710682 non-coding downstream 465843 14244602 ~ 14246174 (-)
G111630 NA non-coding upstream 40748 14794718 ~ 14794949 (-)
G111728 NA non-coding upstream 783506 15537476 ~ 15537836 (-)
G111730 NA non-coding upstream 803973 15557943 ~ 15558201 (-)
G111736 NA non-coding upstream 904028 15657998 ~ 15659412 (-)
G111759 NA non-coding upstream 974643 15728613 ~ 15729533 (-)
G111489 NA other downstream 347595 14360228 ~ 14364422 (-)
AMCG00006663 hmga2 other downstream 1208789 13455432 ~ 13503228 (-)
AMCG00006641 mrps33,LOC106591474 other downstream 1833361 12876292 ~ 12878656 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 2571612 12137182 ~ 12140405 (-)
AMCG00006622 lrp6 other downstream 2581634 12071390 ~ 12130383 (-)
G111767 LOC107575789 other upstream 998851 15752821 ~ 15753235 (-)
AMCG00006719 NA other upstream 1127160 15881130 ~ 15896869 (-)
G112059 NA other upstream 2878921 17632891 ~ 17633445 (-)
AMCG00006754 NA other upstream 3585300 18339270 ~ 18366562 (-)
AMCG00006773 tmem243b,tmem243 other upstream 4869185 19623155 ~ 19631895 (-)

Expression


Co-expression Network