G111699


Basic Information

Item Value
gene id G111699
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15195294 ~ 15200003 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU139872
CGGCTTCACATTAATTGTGATTCTAGCAGCTCACCCCCTCTTACCTTTCTGAAGTTGTTTCAATCCCCTCGTTAAAACCACCATAATGTAAGTAATGTGCTGCTTTATGAAGACCTTAATGCAGACAGACCcattatgtttcctttttttgaaGGCTCCTGAATCTCTCTTTGAGCTCTGATCTAGTTCCTGATCAGGATGTCATAGATGTCATTATCCATGTAGGTCGAAACCCACATGGAAGGCATTTAGCCTGGAGGTACTTCAGGGAAAAGTGGAGCATTTTAAACGCCAgCTGAAAGACTTCATACAGATCAGCGGAGGGGGAGCAGCAGCTGCGTTTGCACGTGCCGTAGAGATAGTGGAAGCTAATGTGAGATGGCACGGCCTCTTTGAAGAACAGTTTTTCCAATGGCTTAGGAAATCCCCCAACAGTTAATCTGTGacgattataaatatttatagcaTGGTATCTCTTTGAAACATTTATActcttaaaaatatgtttttttgaagACAGAGAATAACTTGATTTGAATTGCAAATAGTGAACTGGTTATTTTCCTGCAACATGAAAAGACAATTTTCtgttaaaaagaagaaggaaaaaaagaaaagaaggcgTTGCATTTTCACTGTCAACGTCAGTATTCCTCGTGCAGGCCAAAAGAATGTGTTTTAACGTATTGCATGGTGTTATTTACATTTAGTTGAGACacttttgagtatttttttGTGCATGGTTGTTCATTCCCCCACCGGTATTCCAGCATGCTATACTATAATGTTTCCCAGTCCTGTGTTACCCATTCACTCCTGTGTAAGATGAACAATGACAGAAGAAAGGGCAATATTATGCAATTGTTAAAAGCACAACAACTGTCATGACAATCAGTGTTACAATTGGGGGGAAAAACCTACACTTCTGTTTAGAATAATAATCCATATTTGAGGAGACGAGTCCAGAAACCACAATCCCGGTATCTTATTATCATACAAGCCATACAGGAGAATGAAATCAAACTCTCTGGATGCAACAGGTCAGCGACTGCAGCGGCAGAAATTGTGCTCAGCGTTGTGAGTGACGTGCATGAAAAATAGGTTTTCACATACCTGGCCATCCAGCCCAGCGAAGAGAGTTAATAACTTAAGCTAAACTTGATAGGACTGTAGTGCATAACTTGAAAGGGTCATTGATTTCGGTGTCCTTGCAACATCTATCGAGTATTATACACCTGGATAGATGCCTATGAATAGGAACAAGGTGACTTCTAAACAGAAAGCGTCTCTTGTTAACTGTGCAGTCTGACATTATCAACCAGACTCAAGATTTATCTCCTGGTTGTGTTGGATTATTTGGGGacaaaaaaagaagatgaaTAAAATCTGAGCAAAGAGGCTTTTATGTAGCATGGCCCTTATCTGTTGATTCAATGGCATTTATAGGAAAGCCATCAAGAAACCAGCACCGAGGAATGCTCTTTTTGAGCTGGAGGATATCATCAAATAGTCTCTTTTCTTTCGATCTGTTGTGCTGAGCCCTTTTTGAGGTACTTTAATTCTAATGTGGAGCTTGATATTCTGATAATGATCCCATGTGACCTGCAAATATTGTGTCAATTTCCAGTATCAGTCAAAATGTGCgttaatgtttttttggctGAAATACTTGAATGTGTTTGAGGGAGAAGGGTACCCTTTATTCATCTTTTAATATaaagtcagtgtttttttataccCAGGTCTATTCCATAATACACTAGACCTCAAAATAACTTCCTTTTTTGTCCCGTTTAAAACTAAGTGTTGACATAGCAGCTTTTTTTCTAAATGAGAGACTATATCTTCTGTATTTTAAGCAGAA

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139872 True 1864 lncRNA 0.39 2 15195294 15200003

Neighbor

gene id symbol gene type direction distance location
AMCG00006705 NA coding upstream 127672 15066888 ~ 15067622 (+)
AMCG00006703 tph2,LOC108263971,LOC108423504,LOC106561539 coding upstream 158269 15006312 ~ 15037025 (+)
AMCG00006704 NA coding upstream 193012 14978693 ~ 15002282 (+)
AMCG00006699 rab21,LOC106609839 coding upstream 231814 14948171 ~ 14963480 (+)
AMCG00006700 tmem19,LOC106594838 coding upstream 258042 14931023 ~ 14937252 (+)
AMCG00006709 krr1,LOC107395694 coding downstream 474424 15674427 ~ 15683069 (+)
AMCG00006708 NA coding downstream 513824 15713827 ~ 15718338 (+)
AMCG00006710 NA coding downstream 520050 15720053 ~ 15726140 (+)
AMCG00006713 NA coding downstream 567108 15767111 ~ 15798662 (+)
AMCG00006721 zdhhc17,LOC102798393,LOC107708015 coding downstream 799393 15999396 ~ 16030884 (+)
G111666 NA non-coding upstream 252370 14940208 ~ 14942924 (+)
G111645 NA non-coding upstream 299356 14893799 ~ 14895938 (+)
G111635 NA non-coding upstream 384231 14809248 ~ 14811063 (+)
G111629 NA non-coding upstream 400345 14794718 ~ 14794949 (+)
G111562 NA non-coding upstream 457655 14736202 ~ 14737639 (+)
G111726 NA non-coding downstream 276151 15476154 ~ 15476714 (+)
G111727 NA non-coding downstream 337426 15537429 ~ 15537841 (+)
G111764 NA non-coding downstream 542435 15742438 ~ 15742652 (+)
G111786 NA non-coding downstream 584516 15784519 ~ 15784762 (+)
G111788 LOC106576514 non-coding downstream 649918 15849921 ~ 15869801 (+)
AMCG00006672 NA other upstream 1255819 13933666 ~ 13939475 (+)
G111197 NA other upstream 2151846 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 2543479 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 2872016 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 5627018 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 5737494 20937497 ~ 20944977 (+)
G112567 NA other downstream 5848333 21048336 ~ 21049038 (+)
G112600 NA other downstream 5942862 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 6065250 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 6417629 21617632 ~ 21622508 (+)

Expression


Co-expression Network