G111898


Basic Information

Item Value
gene id G111898
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16714818 ~ 16722048 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140129
CTCACACTTTTATTAAATGACGTTTCTCTCCTGTACACGCATTATCTACTGGTAAAATCTAACAAAGCCTTCTTGATACAAGCTACGTTAAACATTATATGCTGACATGTATTGAAAGTGGTAACAAAAGCAATATCGATTTCAGTACATActtttaagatttaagattaaaaaataaggaTTTGTTACTAAGCACTACCAGCAGcccaaaataaagcatttgataaaataacaaacatctgttttaccatatttgcttttaaataaaaagcaaatgaaacCATAGGAACAACATAAAGGAATTCAAAGTATAGCCAACGCATTTGTTCctgctttaattttgtttaaataactaaaatgctTTCACTGTTTATGTTGTTCGTCATGAAcaagttgtgtagtttgctgaATTATTGGATGATATTTATATGCAAATTGATAAAAGTGATAAAGATCATTTAAATAAGTGACAGGTAATAACAGCATCTTTTTAACCCTTACGTTTCTCACTAGCCTTAAGTgtagattttaaaatagtttctcaaaaaaattaaaatgcacagatCCCAATAACCAGACTATGtaatcattttgtttgtgcCGTTAACGTATTGTATTAATGCATCATCTTCAGCCCAGGTtttcagtgtaaaaataaaaacaaaaatagccagTAGTACTGATGATGTGTACCAAACATATCACTGTCCTCTGTTTTATAAACTGAAAAAGCACCAGGCTTTCTTTTTCATACGAAAAAACAATGCTACGGAATTATAAATGTAGTTCTATCTGCAAGAAATTAAGCATATTTTGGCTAATGGAAGTCTTGATCTAGTGTATTTTGGCTTAAATGTAGCTTACTTAACTACtgaactattaaaaaaataattaaataccaaaATGATCCAATGGAGTCGCCAGAAATGATGTAACTGCAGTTCACCTTGGTCAATAAACAAAACCCTTCTATGATGATACTATTATTATCAGAGGTGTCAATCCTTTgtaatatgcatgtatgtaagaatgtatgtatatatgcatgcatgtatgtacacacatatacatctCATTAGTGTTTAATGGTCCACTActtacattcatgttttttgtttctcaaaacaATCTCACAGGGcctatatacaatacatttacattaaatatagtcTCACCCAAAGTGTTCATAGACATCCCATTTTGAAAGCTGGATTCAGTACTTACTAAACCAGTCACTGTGTTCCTCTTTTAAAATTCAGACAGAGGGAAACAGTTGTGCGTGACTCTCTCATACATGTCTCTAAGGAAAGCTCATCCTGTTATTTGGAAATTCTTCCTCTaataaacaacaagaaaaaacattggAATACTCTAACATCTGCAGGGTGCGCCGGGCATTCTGCGGCAACCTTGCTGGAGACCCACATCCCTCTTCTCAACTTCCAGACACAAGACATCTACCTGGTCAGCTGACCTACAACCTTCAGGAGGGTCTTATTTTCTTGCTTCAGTTGTTCATTTTCATCCTCTATGTCATCCCTATTTAGTAGGTCAATCTCTTCCCTCAGCTTGCCTATCACTTCATCTTTGTCTTGATGGGCTCTCAACATTCGTGTGTTTTCCTGCCTCTCTTTAGCAAGTTCCTGAAAGCAAAAAGATCTCAGTAAAACCATTGCAGAAAAGCATCCCCAAACTGAAACACCTTCCTCAGAAGCATAGTCTTCAATGATGTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140129 True 1735 lncRNA 0.34 2 16714818 16722048

Neighbor

gene id symbol gene type direction distance location
AMCG00006728 syt1,LOC101079537 coding upstream 16707 16695465 ~ 16698111 (+)
AMCG00006727 syt1 coding upstream 37576 16658295 ~ 16677242 (+)
AMCG00006726 NA coding upstream 289612 16377780 ~ 16425206 (+)
AMCG00006725 NA coding upstream 358394 16354450 ~ 16356424 (+)
AMCG00006724 NA coding upstream 369802 16335110 ~ 16345016 (+)
AMCG00006729 rps16,LOC103382554 coding downstream 176233 16898281 ~ 16901493 (+)
AMCG00006730 otogl,LOC107564906,LOC107736094,LOC107662850 coding downstream 181472 16903520 ~ 16940186 (+)
AMCG00006731 NA coding downstream 218214 16940262 ~ 16947460 (+)
AMCG00006732 LOC108413201 coding downstream 232840 16954888 ~ 17022710 (+)
AMCG00006733 myf6 coding downstream 304274 17026322 ~ 17037135 (+)
G111788 LOC106576514 non-coding upstream 845017 15849921 ~ 15869801 (+)
G111786 NA non-coding upstream 930056 15784519 ~ 15784762 (+)
G111764 NA non-coding upstream 972166 15742438 ~ 15742652 (+)
G111727 NA non-coding upstream 1176977 15537429 ~ 15537841 (+)
G111726 NA non-coding upstream 1238104 15476154 ~ 15476714 (+)
G111909 NA non-coding downstream 57354 16779402 ~ 16810470 (+)
G111941 NA non-coding downstream 141108 16863156 ~ 16863355 (+)
G112106 NA non-coding downstream 1492745 18214793 ~ 18215048 (+)
G112181 NA non-coding downstream 1971830 18693878 ~ 18694311 (+)
G112182 NA non-coding downstream 1973111 18695159 ~ 18745217 (+)
AMCG00006672 NA other upstream 2775343 13933666 ~ 13939475 (+)
G111197 NA other upstream 3671370 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 4063003 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 4391540 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 7146542 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 4215449 20937497 ~ 20944977 (+)
G112567 NA other downstream 4326288 21048336 ~ 21049038 (+)
G112600 NA other downstream 4420817 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 4543205 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 4895584 21617632 ~ 21622508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location