G111909


Basic Information

Item Value
gene id G111909
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16779402 ~ 16810470 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140140
taactttatttcatctttatttgtatatgtcaaaatacatttgttttccctccTCAAAATAGTTTCAGCGACTAGTTTCATGCTGATACAAGGTCTGCTCGGTACTACCAATAAAATTATAGCGCTGCAGCcacttcatatattttttttttctttttttgtttaacaataaataaaccaaatataaaacactattaGAAATGCGTAGCTAGGTTAAATCTGCACATGCACCCAAAACTAACACAATTTGCAAAGGGTTGAGTTAACAGTCTCACGGTCCGAGGAACCACTTAACCCATTGTTCACTAGCATTCAAACTCCAATTCTACGCTCTCAAATAAACCAATCATACCAATCAATCCACGACAGGAACAATCAGACGCACTGTAGCATGTTTAGGTGTTTAAAGTCAAGAATCCTGAGCTTGGTAGTATGAGCACGGCCTCACACCGACACAAAACCAATCACCACAAAATACAGGGACAGTCGCCCAGGTTtccaaactaaaatattttttaatagaacaCAAtgacctgtttttcttttttctttttttttttatgaagggGTATAAATTCACATTTAAGTATACAATCAATGAGGATACAATAGCTACTGCAAGctttacaatatacaatttatttgaatggtTTGAATGCTTTGAACTCTTCAGTGGTTTAACGTCACAGCAGTGTGTGCCAGTATGGAGTCACTTATTTTACATgatggtaaataataataataataataataataataataattaaaaagaaatcctGACAGTCAACCATAGCAACATTCACTATAGTAAATTTAAAAGGCCACTGAAATGCATATAATAAATGTTCCAATTTCCGGTCTTTATTTGACATAATGGTCGTCTCAAAACTTTACATGACTCTTCACATGGCATTAACAGTGCATACAGACATTGTAAAAGGACTGGTTAGAAATACCGAAGATTTTAGTGACAATATCTTGGCTAGTACTACAgttaaaaaagggggggggacAGCACTtccaaagatactgtatacAAGGTGTGAAATGTAGTGAAgcaattatattattcttaatcTCACATTTATTACTGtgaacacttaaaaaaatgacaaagaaaaaaaaaactgaaaaaacaacagcactgaATTCAACTTGCCATCTCCTTAACGAGAGAGGCTCTACTGCATCCAATGTACttactacaaaataaatgaaaatcgttaaaacacactttttctGTAGTTGTAGATTTTAATAGTAACAGGTTGGTTTGTCATCAGGAAGCATAATGCATGCCATGTGGTGGTCTGAAActcaaacaatacatatatacagcttCACTCAGTACCGGCTAAAATGAAGTGAAGAATACACAGTATAATCCAACAACtacaatacaaagaaaaggagaaaaaaaaagggggtgAACAATGAAGGCAGAAGAGGTGAAAATAATTCTACTTACAATGGACTCATTAAAGCatttgtttaagaaataaatgcatattgcaCATACAGTGAAAGCCTAAGTTTCACCAAGTCCACCTATTCAATATGGCGAgaatttttatttccttttcttaaaaattgaataaaaaaccGCAATAACTTCCATTATTCTGGTTGGGATCTTGGGtctcttcaaaaaaaaaaaaaaaaaaaaaaatgggacaGCCGAGTGAACACTGAGCTTCTAGGGAAATATCTCTGGCACATGGGTGGTTAGAAGAACATCgcacagcacacaacacttCTAAGCAGGTgtaggaacaaaaacaaacaaaaacggggaaaaaaaacaaaaaacaaaaacacataggCTGTGGCACAATAAATGTCGCTTGAATAACTTATTCTGTGACAGCTGAGAGCTCGATGCATGTGTTTATGTACAGCTAAGGCTTATTGGTTAAATATTCCGAGGCGTCCCTGGCCAAATCGCTTTCGCTCGTTCATCATGGTTTGATTTCTGTAAACTCGTTCCGTCTTGACAGCAGCTGCAGGGTTAAGTAAAATCACCTAGTAGggttttaatgaatgaaaaaggaTGGTGTGGCTGGTGGAGGGGTAGAGCAAATGTGATTGCAGATGGAAGGAGGAACCTGGTAGCTGATGTCTGTtgcaattaatattaatgtgcaATACCATTAGTTGCTGCTGCAGGACCTGGTCTACTTTGAAAGTTTGCTTATGACTCTAATCAAGGCTCCATTTTCATCCTTTAGTCTCTGGTTATCTGCTTTCAAGTCTGGTAGCATCTGAGTTCTTCCTCCATCTCAGATATCCTCCTTTCTAGAGCTCTTCTTTCCTGTTAAGAAAATTTAACtaagtaaatgaataaacaaacaaaacaaacacacaataccaCACAGCTAACAGCGTAAAGGATAATGTGAAATGTGAGCTTTATATAATGCAGCATGGAACAAAGCATGTATGTGAAGCATTTCAAGGCAAAAACTTGTCTGTGAAGATAGTGCTTATTTCATATTTCTACAGTAAGTTCCATGAATGTAGTTAAAAAAGTAACTTATAATTGTGagggattaaaataaaatgttgcaaagCCAGGAAAAATGGATTTCCCCAACCGGATAACTAagaaagaattaaacaaaacagtccaTCGAATGACATACTTGACTGTCCATTCCACAAACAATGGTAACTTGAGCAATGGGCAACGAAATACTATGACTGATGTAGGTTTGGCCAAAACATTGCAACCATCCATAGAAACAAACCCATGCTTACAATGAAACACGTCTTATAGTAAGTGATGCCAATGTCAGATAATTCAGCACGAGATGTCAAATAATCAACGTGATCAAGACATATGGTTCAAACATTGTATATGCATAAACATTTCCAATTATACATGTACTCTTGGCACAATACCTTGAATAGATGTCTAAATACAAGTGTCAACTAAATGCCAACTTGTCTAGctctaaaatgtattctgtatacGTATGCATTATGTTCTATGGCTCCTATCAAAGttattgcatacatttttaaatagcacTCTGCTAATGGAAAGTGAAGAGGAAAATAGAAGTAAATAGTGTACTTTAAGGCATTTTATGTGAAATACTGTAGTAGTCATGCTAACTACCAAAGTGTTCTCATCAGCGGCTTACAATCCATCCCCAAAAAGTCAccaattgtatatatatatttttttccttaccTTGCACCAGGCATACATAAGCATTGTCAAAAACATCTGCCAAATGCGGTATAGGTTGCCATACGGCTAGTTCAAATAAAAACTCTGACCTACCCgcaaaacatacattacaaacttgtacccaatCACCTCTTgctttataagtagtagaaagacacttctgacaataaatgcaGGCCTACTTTGCGATTATCTGGTAGGTCAAAGTCCTAAATTGGGCTAGCCtataattaatcataaaatTGGACAAAAATACTTGTAAGAAGGATGGAGTGTAAGACATTAAGCACATGCAGTCCCACTGAGAGAAGACATGTGACTAATATAACATGTTGAAAAGGCTCTCCCAAGTTGAACACAAATCTGCAAATCAGCTACGTAGAAATCcagaaaagtgaaaatgtactAAGAGAAACACATGTGAAAGAAATAGATGGTGCTTTGGTTGTGGGTTTGTCCCCACTCAAGATAAAGTTGCTAGTGAATAAACagcaagcagcagcagcagcaaggtACTGTAAAAAGTCAGGTTAGACCATACCACCCAGCTGAGAATGGGTCTTGCTGGTTACCTTCAGACATAAATCAGTTTAcatgtgttaaataaaacaaattctcaAATTCCAACACATTAAGTGAGGTCTTGCAGAGAATCACTATTCCTCGATCCTACTTTAccatcaaaatataatttcataaacTCCAGTGTTCTGAATTTACTGATTACTCCAACTTAATGGTTTCACCCTGTTAATGATTACAATATCACAGTATACTGAACAGCTCACACCCGAGACTTTAATTGTAGTTATCAAATCACTTTTTGCACTGTTCGAAGGTTAAACCGAAAGGTGTAATGCATATGGGGTAAAAGCTTCCCTTCACTGTATGCAATTGTaatgaaaaaagttaaatacaatgtgaccacaaaatacacattttgtaaaaaaaaaaaataataattgtgaaagGTATATTGAAAATGTCTCGAGAAAAACATGATTGTTTGGAAAACTCGCAATACTCTAGAATTGTTAACAGTTGTGTCATGGATGATGGCAGTTTAGTTACTAATTTTAAACAAGACATTCTTAAAATCTTTACCCTTTTCTCCATTTCCAACTGTGACCTGTCAGCAAACCGCTCCTGTCGCTGAAAGAGAAAATCAATGTTCAATGGCAccttttgtaaattaaatagtgttcaattgggggagggggcagtAGGTATCAAGTATCTTTAGCATGTTACATTAATAGAGTATCTGATGGTTTTCAAATG
>TU140142
tacaaaaaaaaaaaaaaaaaaaaaagggggtgAACAATGAAGGCAGAAGAGGTGAAAATAATTCTACTTACAATGGACTCATTAAAGCatttgtttaagaaataaatgcatattgcaCATACAGTGAAAGCCTAAGTTTCACCAAGTCCACCTATTCAATATGGCGAgaatttttatttccttttcttaaaaattgaataaaaaaccGCAATAACTTCCATTATTCTGGTTGGGATCTTGGGtctcttcaaaaaaaaaaaaaaaaaaaaaaatgggacaGCCGAGTGAACACTGAGCTTCTAGGGAAATATCTCTGGCACATGGGTGGTTAGAAGAACATCgcacagcacacaacacttCTAAGCAGGTgtaggaacaaaaacaaacaaaaacggggaaaaaaaacaaaaaacaaaaacacataggCTGTGGCACAATAAATGTCGCTTGAATAACTTATTCTGTGACAGCTGAGAGCTCGATGCATGTGTTTATGTACAGCTAAGGCTTATTGGTTAAATATTCCGAGGCGTCCCTGGCCAAATCGCTTTCGCTCGTTCATCATGGTTTGATTTCTGTAAACTCGTTCCGTCTTGACAGCAGCTGCAGGGTTAAGTAAAATCACCTAGTAGggttttaatgaatgaaaaaggaTGGTGTGGCTGGTGGAGGGGTAGAGCAAATGTGATTGCAGATGGAAGGAGGAACCTGGTAGCTGATGTCTGTtgcaattaatattaatgtgcaATACCATTAGTTGCTGCTGCAGGACCTGGTCTACTTTGAAAGTTTGCTTATGACTCTAATCAAGGCTCCATTTTCATCCTTTAGTCTCTGGTTATCTGCTTTCAAGTCTGGTAGCATCTGAaacaaggagaagaaaaaacatgtcaaaCTGCTGGAATTTACAACTTGCGCTTGAAATAAGTTGAGTCTTGGAAAACTTGGGATTCTTTcgtttttttcaaaatatttccctTCTTCATTACAGTTTCTGGGCCCGTTTCCAGACGGTGGTTAACTGAGCTGTTATTCAGTACCCTGCCTTGAAACATTTCCCACAAACCACAAAGCCATGCAGACCAAGTGTTGAATCCCACTGCAGTTCAAGAACAATTGTCttcaacacactgcacaacaaacactggcaaaacaaaacaatacttgTCTTAcggaaaagaacaaaacagaatagGAACAGTACGGCAGatatcaaattcaaatttatgATTGAATATGCATTGTTTCTATAAGATCATTATTGAGATGCATGAAAAACTGGCTCATGGATTATCCCTTTGGCCTTCATAGCTAGATTGCTGCACATGAATATGAACAATATCCCTTAATATATTCTATTGAAAAAATGGTTGCAAATTTTTTAATAGAATGGGAAATTCTAAACCATTGTTGTTGCAGCTATTTTGTCAATCTTGTGTTCTAGAACTAGAAACTAGATGTCCTGGTTTAATGCTTTATCTTTTGCACGTGAATCATTCTATGCCGAAATAAGGAAACGCAAATATCAACTTGCCATCCCActtttcaatcattttaaaagccattttcaaCATGCATACAGATTCTCTGATTTAGGCTGGTCTACAGTCTACAAGTTAGGTAGTTtacttgtataaataaaataattcctggaTTCATAGATTGGGTTCTGTAAGTGACTGCAAAAACTGCTATCAATGACTCATTTAAAATGCCAATATGTCCAAGTATGGATTGCTGCAGACCTGGAGAATGGAACgtgggaggagtaactgtcaatcattttgttaTGTGGCCAATCAAATGCAGAAGATGTCAAACTTTTTTTATGTGGCCAATTAccttcatttataaatgtaaggTGGGAGCAAATGTGTCAGTGTAACTATTGAAGAGTTTGAGTATGTGTGTAACTGTGCAGAGTAGCACTGAAACAGAAAATCGCCATGAGAAAGATCTAAGGAGGTAAATCAGGGCCATATTAGGTAAGAAAACCAATTCTGAATAGTGCATGGACAAAGACAGTATTTGATTTTTTCAAAAATCTTGGCAAAACTAAGACTTTACAAAATAGGGGTTTTTCTGCCCCAACTCTTCCTTtattgtgtgtgaaagagaaacCAATTTAGTTCTTTTGATATTGCTTTGGTATTATGTAATTAGACTATGATCTGTAAATCTACAAGCTCTGACAAAATTAATTCGATTTTCAATTCCCAGAAAATGAACTTTAAAAACAACGAAAATGTCGAcaattatatttcacaaaattgggtggggggggaaaaatactattagaccagtggttttcaaactggtcttggagtaccccctgccctgc

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140140 True 4477 lncRNA 0.35 2 16800845 16810470
TU140142 False 2341 lncRNA 0.37 2 16779402 16804582

Neighbor

gene id symbol gene type direction distance location
AMCG00006728 syt1,LOC101079537 coding upstream 81291 16695465 ~ 16698111 (+)
AMCG00006727 syt1 coding upstream 102160 16658295 ~ 16677242 (+)
AMCG00006726 NA coding upstream 354196 16377780 ~ 16425206 (+)
AMCG00006725 NA coding upstream 422978 16354450 ~ 16356424 (+)
AMCG00006724 NA coding upstream 434386 16335110 ~ 16345016 (+)
AMCG00006729 rps16,LOC103382554 coding downstream 87811 16898281 ~ 16901493 (+)
AMCG00006730 otogl,LOC107564906,LOC107736094,LOC107662850 coding downstream 93050 16903520 ~ 16940186 (+)
AMCG00006731 NA coding downstream 129792 16940262 ~ 16947460 (+)
AMCG00006732 LOC108413201 coding downstream 144418 16954888 ~ 17022710 (+)
AMCG00006733 myf6 coding downstream 215852 17026322 ~ 17037135 (+)
G111898 NA non-coding upstream 57354 16714818 ~ 16722048 (+)
G111788 LOC106576514 non-coding upstream 909601 15849921 ~ 15869801 (+)
G111786 NA non-coding upstream 994640 15784519 ~ 15784762 (+)
G111764 NA non-coding upstream 1036750 15742438 ~ 15742652 (+)
G111727 NA non-coding upstream 1241561 15537429 ~ 15537841 (+)
G111941 NA non-coding downstream 52686 16863156 ~ 16863355 (+)
G112106 NA non-coding downstream 1404323 18214793 ~ 18215048 (+)
G112181 NA non-coding downstream 1883408 18693878 ~ 18694311 (+)
G112182 NA non-coding downstream 1884689 18695159 ~ 18745217 (+)
G112207 NA non-coding downstream 2090469 18900939 ~ 18903543 (+)
AMCG00006672 NA other upstream 2839927 13933666 ~ 13939475 (+)
G111197 NA other upstream 3735954 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 4127587 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 4456124 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 7211126 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 4127027 20937497 ~ 20944977 (+)
G112567 NA other downstream 4237866 21048336 ~ 21049038 (+)
G112600 NA other downstream 4332395 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 4454783 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 4807162 21617632 ~ 21622508 (+)

Expression


Co-expression Network