G111945 (rs16,rps16,LOC103382554)


Basic Information

Item Value
gene id G111945
gene name rs16,rps16,LOC103382554
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16898419 ~ 16901537 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140191
AGATTTGACTTCCCCTTTTGCTGCAAATCTCACATGCGAACCTTAAATTTCATTAAAGCAAAGACAAGAGGCAAGAAATTTGGGAACCAGATTTATTGTTTGATGGAAATGTACACAGAAATTTTAACGGTAAGACTTCTGGTAGCGAGCGCGGGCTCCAGGTCCACCGAACTTCTTGGACTCGCAACGACGAGGATCGGCCACCAGCAGGGTCCTGTCAtactggataaggatgtctttGATTTCCTTCTTTGAAGCCTCATCCACATCTGAAGGAGATACGAGATTGATCAATAATGCaggaaaaaaatctgcaatATACCCTCCATATCTAGATCTCTTGAAAAGCTTCCaaaattgggaaaaaaaaaacattaaggattaaactggaaatgtgttttctatGCAATACATAAAAGATCACATTAACGATTACATTAGAAGTAGCAAATTTCACCCCGATCTTGGAGGAATGGAGACTATTTTGAGAAATGCATCACGTCAACTTTTTTGCAGACCGAAAGGCCAATAAATCAAATCATGGGCCTTCAAATACAGTCCTAGTAATTAGTGTTCCGACTCGGAGGTGCAGTCAAGACTGGGCCCCCATGCGAGCTCCCAATTTACTGACCTGAAGACCAGCTGACTAACTTGTTTCCTTTAAATCATAGAACACATAGTACACATGTATAGGCCAAGATATCATTCAAagctaatacatttttttcaaatgatatGGGAAAAGCACCCCCACTACAAAGCAAGTAAATACAACAAGTGCTCTTCTGCATATTGTGACcattaaatttgatttaatccaagcCCAAACACTTAAACAGCTGCCTAAAAACAAAACGGAGGGAGAAAAACAACTTACACTTCTGGTAGTATGCAACCAGGGATTTGGAAATGGCCTGACGGATAGCTGTGAAGAAATGAGTCAAAAAAAGCTTATGAAAAAATGATAATTCCTGATGTCACCATTTGTTAAactatataaattatacactGCGCTGTTGGTGAGCTATAAGCATCCTACTGTATAAACATACCTGGCAGCTAAACCAGCCCCCCAAACCCTTCTATTCCAGTGTCACATGTTACATTGTCATTTAATTCCATGTCAGGTTCCAAACCCAAGGCAACTGCAGTTCAGTTAACTAGTTGAGAAATTATACCAATACAGAATTAACACttccaggaaattaaaacatgtgcTGTAAAGTACTGCAGTGTGACTTACACGGTTTATACAAAGCCATCATCAATTAAAGAACAATTCACATTGAAGATCCAGGTTCTCTTTTTGGTAGGTTTCTAAAAGAAAACACTTGTTTTTGGTGTTGTGTgttaaaaacatcttaattacCATAAATCTGTGCTACGTGTCCACCACCCTTCACACGAACTCTGATGTCAACGCCAGCAAAGCGCTCCTTGCCCAAGAGCAGAACTGGCTCCAGCAGCTGTACTGCAGAGTCCTGGGCTCGATCATTTCCAGGGGTCTGCCATTCACCTTGATCAGGCCATTGCCCCTCTTGCAATGAGCAACAGCTGTCGCAGTTTTCTTTGCGTCCAAAGACCTGGACGGACTGCAAGGGACCTTTAGCCGGCATGTTCCTAAAAGAGAGAATATGTGTGAATTATTGCTTAGATTTACTTTAATCCGATAAAGAACAATATTTACGGAGAGCCCAATATCACACATACCGAGTTCTGCTACAGA
>TU140192
AGATTTGACTTCCCCTTTTGCTGCAAATCTCACATGCGAACCTTAAATTTCATTAAAGCAAAGACAAGAGGCAAGAAATTTGGGAACCAGATTTATTGTTTGATGGAAATGTACACAGAAATTTTAACGGTAAGACTTCTGGTAGCGAGCGCGGGCTCCAGGTCCACCGAACTTCTTGGACTCGCAACGACGAGGATCGGCCACCAGCAGGGTCCTGTCAtactggataaggatgtctttGATTTCCTTCTTTGAAGCCTCATCCACATCTTCTGGTAGTATGCAACCAGGGATTTGGAAATGGCCTGACGGAacCATAAATCTGTGCTACGTGTCCACCACCCTTCACACGAACTCTGATGTCAACGCCAGCAAAGCGCTCCTTGCCCAAGAGCAGAACTGGCTCCAGCACTTGTACTGCAGAGTCCTGGGCTCGATCATTTCCAGGGGTCTGCCATTCACCTTGATCAGGCCATTGCCCCTCTTGCAATGAGCAACAGCTGTCGCAGTTTTCTTTGCGTCCAAAGACCTGGACGGACTGCAAGGGACCTTTAGCCGGCATGTTCCTAAAAGAGAGAATATGTGTGAATTATTGCTTAGATTTACTTTAATCCGATAAAGAACAATATTTACGGAGAGCCCAATATCACACATACCGAGTTCTGCTACAGA
>TU140193
TATACTATTCATTCAGAAGTTATCCATATAGGCTGCACAACAACTTAAAACTGGAAGAGCTGGAAAACACAATAGCAGCAAATATTCCCCCAAAAACATCAGGACAGTATTGAGAATTCAGATTACATGCCCAAAATAAGAATGAATTCCAGACTTTAGCTCACAGTATTAAATCCTGCAGATCTCCTGCAGTTAAGCACAATGAATCATCATCACACTAAACAGGGGCACTAGGCCTCTGCACTGATGTGGGCTGAACAGGCGGCCTGTCCTCTCACCTTGTACTGCAGAGTCCTGGGCTCGATCATTTCCAGGGGTCTGCCATTCACCTTGATCAGGCCATTGCCCCTCTTGCAATGAGCAACAGCTGTCGCAGTTTTCTTTGCGTCCAAAGACCTGGACGGACTGCAAGGGACCTTTAGCCGGCATGTTCCTAAAAGAGAGAATATGTGTGAATTATTGCTTAGATTTACTTTAATCCGATAAAGAACAATATTTACGGAGAGCCCAATATCACACATACCGAGTTCTGCTACAGA
>TU140194
AGATTTGACTTCCCCTTTTGCTGCAAATCTCACATGCGAACCTTAAATTTCATTAAAGCAAAGACAAGAGGCAAGAAATTTGGGAACCAGATTTATTGTTTGATGGAAATGTACACAGAAATTTTAACGGTAAGACTTCTGGTAGCGAGCGCGGGCTCCAGGTCCACCGAACTTCTTGGACTCGCAACGACGAGGATCGGCCACCAGCAGGGTCCTGTCAtactggataaggatgtctttGATTTCCTTCTTTGAAGCCTCATCCACATCTGAAGGAGATACGAGATTGATCAATAATGCaggaaaaaaatctgcaatATACCCTCCATATCTAGATCTCTTGAAAAGCTTCCaaaattgggaaaaaaaaaacattaaggattaaactggaaatgtgttttctatGCAATACATAAAAGATCACATTAACGATTACATTAGAAGTAGCAAATTTCACCCCGATCTTGGAGGAATGGAGACTATTTTGAGAAATGCATCACGTCAACTTTTTTGCAGACCGAAAGGCCAATAAATCAAATCATGGGCCTTCAAATACAGTCCTAGTAATTAGTGTTCCGACTCGGAGGTGCAGTCAAGACTGGGCCCCCATGCGAGCTCCCAATTTACTGACCTGAAGACCAGCTGACTAACTTGTTTCCTTTAAATCATAGAACACATAGTACACATGTATAGGCCAAGATATCATTCAAagctaatacatttttttcaaatgatatGGGAAAAGCACCCCCACTACAAAGCAAGTAAATACAACAAGTGCTCTTCTGCATATTGTGACcattaaatttgatttaatccaagcCCAAACACTTAAACAGCTGCCTAAAAACAAAACGGAGGGAGAAAAACAACTTACACTTCTGGTAGTATGCAACCAGGGATTTGGAAATGGCCTGACGGATAGCTGTGAAGAAATGAGTCAAAAAAAGCTTATGAAAAAATGATAATTCCTGATGTCACCATTTGTTAAactatataaattatacactGCGCTGTTGGTGAGCTATAAGCATCCTACTGTATAAACATACCTGGCAGCTAAACCAGCCCCCCAAACCCTTCTATTCCAGTGTCACATGTTACATTGTCATTTAATTCCATGTCAGGTTCCAAACCCAAGGCAACTGCAGTTCAGTTAACTAGTTGAGAAATTATACCAATACAGAATTAACACttccaggaaattaaaacatgtgcTGTAAAGTACTGCAGTGTGACTTACACGGTTTATACAAAGCCATCATCAATTAAAGAACAATTCACATTGAAGATCCAGGTTCTCTTTTTGGTAGGTTTCTAAAAGAAAACACTTGTTTTTGGTGTTGTGTgttaaaaacatcttaattacCATAAATCTGTGCTACGTGTCCACCACCCTTCACACGAACTCTGATGTCAACGCCAGCAAAGCGCTCCTTGCCCAAGAGCAGAACTGGCTCCAGCTTGTACTGCAGAGTCCTGGGCTCGATCATTTCCAGGGGTCTGCCATTCACCTTGATCAGGCCATTGCCCCTCTTGCAATGAGCAACAGCTGTCGCAGTTTTCTTTGCGTCCAAAGACCTGGACGGACTGCAAGGGACCTTTAGCCGGCATGTTCCTAAAAGAGAGAATATGTGTGAATTATTGCTTAGATTTACTTTAATCCGATAAAGAACAATATTTACGGAGAGCCCAATATCACACATACCGAGTTCTGCTACAGA

Function

symbol description
rps16 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS16 (ribosomal protein S16).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140191 True 1726 lncRNA 0.40 3 16898419 16901537
TU140192 False 672 lncRNA 0.47 5 16898419 16901537
TU140193 False 539 lncRNA 0.44 2 16898419 16899893
TU140194 False 1724 lncRNA 0.40 3 16898419 16901537

Neighbor

gene id symbol gene type direction distance location
AMCG00006736 ppp1r12a coding downstream 36642 16861107 ~ 16861777 (-)
AMCG00006735 ppp1r12a,LOC107591124 coding downstream 63379 16800846 ~ 16835040 (-)
AMCG00006734 NA coding downstream 114862 16716275 ~ 16783557 (-)
AMCG00006723 NA coding downstream 836609 16051366 ~ 16061810 (-)
AMCG00006722 csrp2,LOC107383140,LOC107087065 coding downstream 859031 16032419 ~ 16039388 (-)
AMCG00006737 lin7a coding upstream 158826 17060363 ~ 17072397 (-)
AMCG00006740 NA coding upstream 243162 17144699 ~ 17271736 (-)
AMCG00006741 ppfia2 coding upstream 425092 17326629 ~ 17327076 (-)
AMCG00006743 NA coding upstream 502089 17403626 ~ 17406828 (-)
AMCG00006746 slc6a15,LOC102794091 coding upstream 870430 17771967 ~ 17793459 (-)
G111940 NA non-coding downstream 35452 16862677 ~ 16862967 (-)
G111765 NA non-coding downstream 1155704 15742446 ~ 15742715 (-)
G111759 NA non-coding downstream 1168886 15728613 ~ 15729533 (-)
G111736 NA non-coding downstream 1239007 15657998 ~ 15659412 (-)
G111730 NA non-coding downstream 1340218 15557943 ~ 15558201 (-)
G112020 NA non-coding upstream 207440 17108977 ~ 17327586 (-)
G112024 LOC103376870 non-coding upstream 226780 17128317 ~ 17135516 (-)
G112140 NA non-coding upstream 1497726 18399263 ~ 18408777 (-)
G112195 NA non-coding upstream 1793535 18695072 ~ 18745217 (-)
G112205 NA non-coding upstream 1982091 18883628 ~ 18886046 (-)
AMCG00006719 NA other downstream 1001550 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 1145184 15752821 ~ 15753235 (-)
G111621 NA other downstream 2144449 14712017 ~ 14753970 (-)
G111489 NA other downstream 2533997 14360228 ~ 14364422 (-)
AMCG00006663 hmga2 other downstream 3395191 13455432 ~ 13503228 (-)
G112059 NA other upstream 731354 17632891 ~ 17633445 (-)
AMCG00006754 NA other upstream 1437733 18339270 ~ 18366562 (-)
AMCG00006773 tmem243b,tmem243 other upstream 2721618 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 2731556 19633093 ~ 19635925 (-)
G112420 NA other upstream 3334319 20235856 ~ 20236206 (-)

Expression


Co-expression Network