G112182


Basic Information

Item Value
gene id G112182
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18695159 ~ 18745217 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140495
ATTGCTCAAGATAAACAGACATTAAGTacttttatttccaaatgttaagataaaaaaacaaaaaaaacaatccataaaACAGATGGATAAACATTCATTCCCATAACAGgaagatgcaaaataaacattttatggattttgtttgtttccattattttctttttttttttttttgcaatctCAAACTATTCtttgtaaaacaaaaggaaaaagtcAATCCCGAAATAAATTAGTGAGTGAGCGGACTGAAAAACGTCGCATTCCACCCCCTCTCCCCGTTCTCCGTCCCGTCACACCTCTACAGTTAACATTTGGTTTGCAAGGTGCTCAGGAGGAGGGGACAAACAATCTGCATTTGAATCCTGCTGCAacgagagaaggagaggggaaaaaaagcaaagaaaagaaaaaaaaaaaaaagcaacccACATGGTTAACATGCTATTCCTCAACATAAAGAAATGTTAGTATTTTTGACTGTAGGCATATATAAACACCTGCTTCTAGAACATACTATTTGCCACCCTGAGAAAGATATTCCTATCAGAACCTGCACAAAAGGGAGACCCACCCACCCCAACCCTGCAATGCAGTTAATTTCAAAACCCAAAACTACGGTTCTGTAGGCCACATGTTAACATctgcattttcataaaaaatacaaaggtACGTTTTACATGGTCATCTGTATCAAAGTTTCCCTAAGGGCTGTGTTATGAAATAAAGTACCTTGTGCAGCGATACCAGTGTATACCTGTCAATTCTTTAAATTTCATCTGTCAAATATTTAGTGTTTCCAGTATATCAGGTGCCAAACtatccacacacaaacacacacacgaaaGAAATGCAGCAACGTTTTGTCGGTAAGGGGAGTCTTTTATGGACTAAATATTAAGATGAAGACAAAAAtgcaaactgtttttttttgttttttt
>TU140496
ATTGCTCAAGATAAACAGACATTAAGTacttttatttccaaatgttaagataaaaaaacaaaaaaaacaatccataaaACAGATGGATAAACATTCATTCCCATAACAGgaagatgcaaaataaacattttatggattttgtttgtttccattattttctttttttttttttttgcaatctCAAACTATTCtttgtaaaacaaaaggaaaaagtcAATCCCGAAATAAATTAGTGAGTGAGCGGACTGAAAAACGTCGCATTCCACCCCCTCTCCCCGTTCTCCGTCCCGTCACACCTCTACAGTTAACATTTGGTTTGCAAGGTGCTCAGGAGGAGGGGACAAACAATCTGCATTTGAATCCTGCTGCAacgagagaaggagaggggaaaaaaagcaaagaaaagaaaaaaaaaaaaaagcaacccACATGGTTAACATGCTATTCCTCAACATAAAGAAATGTTAGTATTTTTGACTGTAGGCATATATAAACACCTGCTTCTAGAACATACTATTTGCCACCCTGAGAAAGATATTCCTATCAGAACCTGCACAAAAGGGAGACCCACCCACCCCAACCCTGCAATGCAGTTAATTTCAAAACCCAAAACTACGGTTCTGTAGGCCACATGTTAACATctgcattttcataaaaaatacaaaggtACGTTTTACATGGTCATCTGTATCAAAGTTTCCCTAAGGGCTGTGTTATGAAATAAAGTACCTTGTGCAGCGATACCAGTGTATACCTGTCAATTCTTTAAATTTCATCTGTCAAATATTTAGTGTTTCCAGTATATCAGGTGCCAAACtatccacacacaaacacacacacgaaaGAAATGCAGCAACGTTTTGTCGGTAAGGGGAGTCTTTTATGGACTAAATATTAAGATGAAGACAAAAAtgcaaactgtttttttttgttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140495 True 938 lncRNA 0.36 2 18695159 18745217
TU140496 False 938 lncRNA 0.36 2 18695159 18744463

Neighbor

gene id symbol gene type direction distance location
AMCG00006752 LOC107577127 coding upstream 294968 18368664 ~ 18400191 (+)
AMCG00006753 NA coding upstream 355702 18317693 ~ 18339457 (+)
AMCG00006750 NA coding upstream 730388 17963401 ~ 17964771 (+)
AMCG00006751 NA coding upstream 752935 17938902 ~ 17942224 (+)
AMCG00006748 NA coding upstream 830501 17860132 ~ 17864658 (+)
AMCG00006769 LOC108263977,LOC108444204,LOC107665551,LOC107559415 coding downstream 792116 19537333 ~ 19541966 (+)
AMCG00006772 grm3,LOC107090533 coding downstream 810186 19555403 ~ 19568758 (+)
AMCG00006770 LOC106594134 coding downstream 866102 19611319 ~ 19621286 (+)
AMCG00006771 NA coding downstream 890900 19636117 ~ 19642171 (+)
AMCG00006779 NA coding downstream 901913 19647130 ~ 19650694 (+)
G112181 NA non-coding upstream 848 18693878 ~ 18694311 (+)
G112106 NA non-coding upstream 480111 18214793 ~ 18215048 (+)
G111941 NA non-coding upstream 1831804 16863156 ~ 16863355 (+)
G111909 NA non-coding upstream 1884689 16779402 ~ 16810470 (+)
G111898 NA non-coding upstream 1973111 16714818 ~ 16722048 (+)
G112207 NA non-coding downstream 155722 18900939 ~ 18903543 (+)
G112233 NA non-coding downstream 350411 19095628 ~ 19100398 (+)
G112259 NA non-coding downstream 650700 19395917 ~ 19396197 (+)
G112275 NA non-coding downstream 750317 19495534 ~ 19495765 (+)
G112295 NA non-coding downstream 881596 19626813 ~ 19628164 (+)
AMCG00006672 NA other upstream 4755684 13933666 ~ 13939475 (+)
G111197 NA other upstream 5651711 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 6043344 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 6371881 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 9126883 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 2192280 20937497 ~ 20944977 (+)
G112567 NA other downstream 2303119 21048336 ~ 21049038 (+)
G112600 NA other downstream 2397648 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 2520036 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 2872415 21617632 ~ 21622508 (+)

Expression


Co-expression Network