G112205


Basic Information

Item Value
gene id G112205
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18883628 ~ 18886046 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140523
GCGCGGCTGTGCCACTTCTTCAGCAGCCTCGGAGGACGACGGTTGTGTGTCCGTACAGCTGCCGGTCTGCAGAGGGCACTCTCTCTTCCCTGAGCCTTGCAACCTGCAGACCTTAATCTCAACCCTCGGAGTCTGAGAACTCAGATCTGCCTTTGGCACCGTTTGTGGGGTCTCCAGGTAAATGTGTCATCTCATGATACAGGTACATGGTGGCATGTTTTTGCAGAATTGTCTGCATCTATGAAGAAACAATGCTGAGTACAGATCCTGCATAGCTTGTACAACGTTAGCATTTCTTTGGCCATGGGTAGATGTAATCCGTAGTTTTGGCGAAAAGTACTGTCCTCTTTTCTGTCTGACTGCTCACTAACGGCTCTCTTGTTCTTTAGGATCAGTTCCTGGTGCCTATGCGACTTGTCCACACTGCCAATTGAGCTCGGCTTCAGTTGGATCCTGGGGACACCTATATCTTAACTTCAATTTCTTATTCTAATAGATCCCATTGCTAAAAGCTTGCTGATCATCAGTAGTTTTCTTCCCATAGCTCCTCACCAGGACCAAGTTTTCTGAAGTTGGTATTGTGAGCAGTGTTCAGACCTTTGGCATCAGTAGATATTGACTATAAGGAACATTGGAGaacatatgtacagtatgttaaGGTTTTACTAATGTGTCATGGGCTTTTTTGCAGGTCTGCCTTGTCATTCTACAGCACTAAATGAAGAGTTCATCTTGGAGAAACCTCTTCATATGCACTAGGTGTTCTATTGAAATCTGCTCATATTGCTTTATCTAAATCAAAGTGCAATTGGTCATTACCAGTGCATGTGTTTTACAGACTCATTTACTATTATCAGTGTTTGAGATACCCCAGCTTAGTGTTAAGGTGAGAAGATCATTATCTAGTACATGAACTGAAGGTAATTtaccttttgtttattttgtattgctgccAATACAAAACTGTACTGGTTTTACAATGGCACTTTTCTATCCCGGTCAAATCTAATGCACTTCATGGCTTCTCTTTCAGGGCTAAATGAGCTTCACTGCATTTGACTCCTCACATTAGTCTATTCAGTGCAgctgttttccatttaaatggaACAACTTAATTACTCAATCAACTAAACCTTTGCAGAAAGTGCTTTGGCTTAAAAATATATGGTTTTGAATCAGTTTGGTGGAGTTGGTCCTACTAAGTACAaacctgaataaaaaaaaaaatttgaatCT
>TU140524
GCGCGGCTGTGCCACTTCTTCAGCAGCCTCGGAGGACGACGGTTGTGTGTCCGTACAGCAGCTGCCGGTCTGCAGAGGGCACTCTCTCTTCCCTGAGCCTTGCAACCTGCAGACCTTAATCTCAACCCTCGGAGTCTGAGAACTCAGATCTGCCTTTGGCACCGTTTGTGGGGTCTCCAGGTAAATGTGTCATCTCATGATACAGGTACATGGTGGCATGTTTTTGCAGAATTGTCTGCATCTATGAAGAAACAATGCTGAGTACAGATCCTGCATAGCTTGTACAACGTTAGCATTTCTTTGGCCATGGGTAGATGTAATCCGTAGTTTTGGCGAAAAGTACTGTCCTCTTTTCTGTCTGACTGCTCACTAACGGCTCTCTTGTTCTTTAGGATCAGTTCCTGGTGCCTATGCGACTTGTCCACACTGCCAATTGAGCTCGGCTTCAGTTGGATCCTGGGGACACCTATATCTTAACTTCAATTTCTTATTCTAATAGATCCCATTGCTAAAAGCTTGCTGATCATCAGTAGTTTTCTTCCCATAGCTCCTCACCAGGACCAAGTTTTCTGAAGTTGGTATTGTGAGCAGTGTTCAGACCTTTGGCATCAGTAGATATTGACTATAAGGAACATTGGAGaacatatgtacagtatgttaaGGTTTTACTAATGTGTCATGGGCTTTTTTGCAGGTCTGCCTTGTCATTCTACAGCACTAAATGAAGAGTTCATCTTGGAGAAACCTCTTCATATGCACTAGGTGTTCTATTGAAATCTGCTCATATTGCTTTATCTAAATCAAAGTGCAATTGGTCATTACCAGTGCATGTGTTTTACAGACTCATTTACTATTATCAGTGTTTGAGATACCCCAGCTTAGTGTTAAGGTGAGAAGATCATTATCTAGTACATGAACTGAAGGTAATTtaccttttgtttattttgtattgctgccAATACAAAACTGTACTGGTTTTACAATGGCACTTTTCTATCCCGGTCAAATCTAATGCACTTCATGGCTTCTCTTTCAGGGCTAAATGAGCTTCACTGCATTTGACTCCTCACATTAGTCTATTCAGTGCAgctgttttccatttaaatggaACAACTTAATTACTCAATCAACTAAACCTTTGCAGAAAGTGCTTTGGCTTAAAAATATATGGTTTTGAATCAGTTTGGTGGAGTTGGTCCTACTAAGTACAaacctgaataaaaaaaaaaatttgaatCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140523 False 1236 lncRNA 0.41 2 18883628 18886046
TU140524 True 1239 lncRNA 0.41 2 18883628 18886046

Neighbor

gene id symbol gene type direction distance location
AMCG00006761 atp2b1,LOC103370548,LOC107690705 coding downstream 171232 18696741 ~ 18712396 (-)
AMCG00006760 NA coding downstream 195392 18653504 ~ 18688236 (-)
AMCG00006758 LOC107574886,LOC107572944,LOC107679613,LOC106573116,LOC107665720 coding downstream 236860 18642384 ~ 18646768 (-)
AMCG00006759 NA coding downstream 279966 18536049 ~ 18603662 (-)
AMCG00006755 NA coding downstream 397464 18415916 ~ 18486164 (-)
AMCG00006766 NA coding upstream 1559 18887605 ~ 18903547 (-)
AMCG00006762 NA coding upstream 28956 18915002 ~ 18920800 (-)
AMCG00006763 NA coding upstream 53104 18939150 ~ 18962560 (-)
AMCG00006764 NA coding upstream 114881 19000927 ~ 19002781 (-)
AMCG00006765 NA coding upstream 120334 19006380 ~ 19046061 (-)
G112195 NA non-coding downstream 138411 18695072 ~ 18745217 (-)
G112140 NA non-coding downstream 474851 18399263 ~ 18408777 (-)
G112020 NA non-coding downstream 1556042 17108977 ~ 17327586 (-)
G112024 LOC103376870 non-coding downstream 1748112 17128317 ~ 17135516 (-)
G111945 rs16,rps16,LOC103382554 non-coding downstream 1982091 16898419 ~ 16901537 (-)
G112270 LOC100136012 non-coding upstream 522773 19408819 ~ 19418420 (-)
G112287 NA non-coding upstream 628753 19514799 ~ 19515004 (-)
G112288 LOC108263977,LOC105018424 non-coding upstream 651159 19537205 ~ 19537793 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding upstream 655057 19541103 ~ 19541968 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding upstream 678910 19564956 ~ 19566015 (-)
AMCG00006754 NA other downstream 517066 18339270 ~ 18366562 (-)
G112059 NA other downstream 1250183 17632891 ~ 17633445 (-)
AMCG00006719 NA other downstream 2986759 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 3130393 15752821 ~ 15753235 (-)
G111621 NA other downstream 4129658 14712017 ~ 14753970 (-)
AMCG00006773 tmem243b,tmem243 other upstream 737109 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 747047 19633093 ~ 19635925 (-)
G112420 NA other upstream 1349810 20235856 ~ 20236206 (-)
AMCG00006807 NA other upstream 1761274 20647320 ~ 20653659 (-)
AMCG00006813 NA other upstream 1968011 20854057 ~ 20964562 (-)

Expression


Co-expression Network