G112207


Basic Information

Item Value
gene id G112207
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18900939 ~ 18903543 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140528
ttttaattcagatttgtagttttcatttatattatgGTACCCACTATTTATTACAAACATTGCAATTGGTTGaatcatacaaacacacaaacacaactatTGTGAATAACCAATAAATAGAACATGAAGAAACCTAGTGCATCCCGGTACTGTAGTGtattcatctttaaaaatagtttgtttttcaggCACTTTTTATGCAGTATGCTTACCATTGGGTATTGTTATAATGCTAAATGGCATGTCAAGTAATATTCTTTTGGGTGTATGTATcctaaaaatacataactgtGGATGAAATTATTTCTGACAGGgttgctaaaaaataaacaaatgacaaaacaagaGCAAAAAGCTGAACAagcaaggggaaaaaagaataTGCACAGCAACCTAAAAAATAAGTGTATGATATTACTAAAGGAACAATACTATAAAGTGTAAACTAAcagaaagttaataaaatatggtTTATGTTTTGGAAACACtgaatatttatattgaatcaaataaattattttaatcataaacGGGTAGGCATTGTCAGTAAAATCTGTTTTATGTTATCCTCAACAATAATATATCTGTTCATTTATCCAGTTATATCCCAGATTTAACTATTAACTATCCAATCGTGTCAACATCCAACCTATAGGATAGATATTCTAGTATAaagtataatgtattaattatttttccatttacttttttattcaaattaattaggaatgttcaaataataatatagaactTCAAACAGTAAAGTTCTGGTCCTTAAAAGGGTAGATTGTGCTAGTTTAATGCAAGACTCATTTGTTTAGgctcaaaatattgtatttttttaaattaaaattttcaGGGAAAGATGCATTTCATACACGATTGTGAACATGAATCAGGCTTAAATAACAACAGCCCGTAGAAGTCGGAAGCACATCATGAGGTCCATTGGAATGGGCGGCTTTATCTCATTGCCATCGAGACGAAGGTAACGTAGACGTGGCGTCTTTTCATCATGGTAGTCATCAACGATACCGACAGGCAGAGGGCATATGTCACTACCATTAACActtttattttgttatgatcGAGATGGAGGTGTTCCAGGCTGCAATGGAACTGAGGCACTTGGGTGAGCTGGTTGTGAGATAACTGCAAGTCGAGGATGGTGGAGATGTTGAAGATGTTCTTTGGAAGGCTGCCATCAGCAAGCTTGTTATAATTAAGCCTAAGGAAGGAAACTTTTGGTGTTTCCTTGAAGTAGTTGTCAGGGATTTTCTCAATTGAGTTGCTATCAAGGAATAACTGCAAGGTAGTTGAAGGCAATCCAGCAGGCATTTTCTTCAGATTGTTTTTAGACAGGTTGATCTGGACGAGATTCTTCGTGCCCTTAAAGGTATTTTCTGTAATGGCTGAATCCTCCAGCTTATTGTTTTGAAGGTCTAACATTGCAAGGTTTTCCATGCCATCAAAGACCCCAGGAGGGATTTTGGAGATTCTGTTCCTTGATAGTCGCAGTTGTTCCAGTCTTTTTGGAAGAAGAGAGGGCACTTCGTCCAGCAGGTTATCTTCtatatacaaatacagcagACTTGTCATttcctgaaatacatttttttcaatccCGTTATTGGTGATCTTGTTCTTGTTCAAGTTGATCCACTTGAGTTGCGTGACATTCTTAAAGGACTTTTCTGAAACAACATCGATCAGGTTGTTTTGGAGATACAAGTACCAGGTGTAGGGGGGGATGCTGGGTATCTGCTTCAGCCCCTTGCTGTCACAATAAACAGCATTGGGAAAGCTAGGTGGACAACGGCATTCCTCTGGACATGCCTGAATTTGTTCAAGATATTCAGCATAAGACATATCTTGAGACCAGACCGAAGCAGCCAGTAGCAAAACAGCAATGCTTGCAAACATCTTGGCGTTGCTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140528 True 1938 lncRNA 0.36 2 18900939 18903543

Neighbor

gene id symbol gene type direction distance location
AMCG00006752 LOC107577127 coding upstream 500748 18368664 ~ 18400191 (+)
AMCG00006753 NA coding upstream 561482 18317693 ~ 18339457 (+)
AMCG00006750 NA coding upstream 936168 17963401 ~ 17964771 (+)
AMCG00006751 NA coding upstream 958715 17938902 ~ 17942224 (+)
AMCG00006748 NA coding upstream 1036281 17860132 ~ 17864658 (+)
AMCG00006769 LOC108263977,LOC108444204,LOC107665551,LOC107559415 coding downstream 633790 19537333 ~ 19541966 (+)
AMCG00006772 grm3,LOC107090533 coding downstream 651860 19555403 ~ 19568758 (+)
AMCG00006770 LOC106594134 coding downstream 707776 19611319 ~ 19621286 (+)
AMCG00006771 NA coding downstream 732574 19636117 ~ 19642171 (+)
AMCG00006779 NA coding downstream 743587 19647130 ~ 19650694 (+)
G112182 NA non-coding upstream 155722 18695159 ~ 18745217 (+)
G112181 NA non-coding upstream 206628 18693878 ~ 18694311 (+)
G112106 NA non-coding upstream 685891 18214793 ~ 18215048 (+)
G111941 NA non-coding upstream 2037584 16863156 ~ 16863355 (+)
G111909 NA non-coding upstream 2090469 16779402 ~ 16810470 (+)
G112233 NA non-coding downstream 192085 19095628 ~ 19100398 (+)
G112259 NA non-coding downstream 492374 19395917 ~ 19396197 (+)
G112275 NA non-coding downstream 591991 19495534 ~ 19495765 (+)
G112295 NA non-coding downstream 723270 19626813 ~ 19628164 (+)
G112302 NA non-coding downstream 729696 19633239 ~ 19635224 (+)
AMCG00006672 NA other upstream 4961464 13933666 ~ 13939475 (+)
G111197 NA other upstream 5857491 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 6249124 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 6577661 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 9332663 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 2033954 20937497 ~ 20944977 (+)
G112567 NA other downstream 2144793 21048336 ~ 21049038 (+)
G112600 NA other downstream 2239322 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 2361710 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 2714089 21617632 ~ 21622508 (+)

Expression


Co-expression Network