G112233


Basic Information

Item Value
gene id G112233
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19095628 ~ 19100398 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140557
taatttacAGCAGCAGTTTCTCTTATATTTCCATCCAGTTCCATAGAGACCGTCTGAAATGCAATGAGCAAAGCAGTCATGTAAATGCATTGCTCTTAATAAAACACCCATGCTATCTGCTGGATACTGTTCTGTGttgcactgaaatattaaataacttttttccaaGTGGGGAACATGGTTGTATATTAGTAGATGAAAAGTGATATACAACACATTGGAATCGAGTACCTATGGATGCCAGTACTTTACACTGTACCTTTGATTTACctaaggaaaaatatatacaccttTAAAACAGGTTTATGTGTACTGCATAAAGCAAAAGGCAGATCTATTACACACAACATTAGTcaatactaaattatatatataaaaattgatgcattaaaatagCATTCACATGCAATTTGTACAcagtgtcttttatttttatttgtttggaccatgacatgattttattttttacattaaattcacAGCTACTTTTCAGGGTATATATTATCTTGCAAACAGAGCCATCTTGCAAATACTTAATTTTGCATAATGAAATGTATCCAACAAAAGTATCGAGACAGAGAATGTGTAAACTCTCCGATCTTTACGCTCCTGTCATTTTAAGAAGTAAACTTTGGGCGACCTGGGAACAAAACGAACAAGAAAGCTACTGAGGGGGAATGAATGGGGTCTAGGTGTATATAGACACTGCGTTACGAgtcttttaataattattatgcaCATAGGCCACCAttaattccttttcttttgctgtTAAGGTTCAGCAATGGCAGGGGGAAATGGCAGCTCAGGTGGCTGGTGTTTAAAAACGTATCTATCCTCCTGACGCCCTCTATGTGCTGATCCACACAATTGGTTTCACAGTTTCCAGCCCCACGTCCAGGCTGCCTGCAGACGAGCTACAACAGTTGGAAGTATTGTGAGATTTGACCAGGTTTAATAGGAAAGGCCTCAAAAACAACCGCATGATTCATAGTCGAGCTATAGCCAGGCACTGTTCGCCATGCTATCACATTGTGTTTGAAACAAAGGTATAACGTCTAAACGGAGCTTTATTTCAGAAGCACTTCCTGtatcacattttcattaaaaataaaataaatacttaaacaaGGGAGCTTATTGTAGAAACGTGTACTACATCCAATACATACTTTATgaaataacaaagaaacaaaaaaatcccagaTAACCAGTAATTATTGGGCCAAGGCTGTCAGGATGTCAGTCACTTTGATAGATTGTTAATTGTAATTGACAATCAGCACCGGCGGCAACATTGGTTAATGATGGACGGCCGAGCctggtgtctgtgtttgcaAATGAGATACAGCTTGAACTCCTTTTAGGCCTGACAATGTCCCCAGATGCATTAGTTGTTACTGATGTTGATCTATGGTTTTGTGACAATATTGGTTCACTTTCTTTTGCCGTTGTTCACTAAACGAACAATGCGATCTTGGCTCATGATTGTGGCTCTAAGGTTGGGAATATTTAACCAACACATGCTCAACAAGATTAGTCTGTCTGGCTGGAGGAGTCATGCCATCATCTTAAAGACTGGTTACATTTGTTGCTGTAGCTCTGGGACATCATTAGAGTTTATTTTCTCCCAAATAAGGAGTTGTGTTCAATCACCGATACATACATCCACTTATCAAATAACTTGGGTCATATATTCAAAGGTTTTGTGGATCTGAGAAACGTTTCTTGCAGCCCTTAGTGCTTTGTTAGCATCTTGCTTAAAATCGTTAGTCAGCAAAATTCAAAGGAGGAATGTCTGTCAAAACACTGCGGGTTTAAACTCACGATCTAGCTTAAACAGGCATTATAAGCAACTCTAGAAATACTTGCTCGAGTTGGAGAATGTATGGGAGTAATAGTTTGCTTTCCAGATAAAAAAGCAATCTATTTGGAAGAAGTGTCAGCACATTATTTTGCGAGGACGAATAAatccaaatgtaaaaaacatacataataaaataggGGCTACAGTGAACAACTGCAGTTTATTCACCAACTAATTATATTTGTCATAACACATCTGGTTTAATGGTGTGATGCTCTAAAGGTCACTGTCTCTTATTTGGATAAAAATACAGATGGACAATTTTTgtaaacaatgaaataataataatcattataataaaggaaaataaaggaaagtatCATCCAGGGTGACCTAAACATTTATAGtctacatatatgtattaatttacataatgtaCAACAACTCCTTATGTGCATCTTTCCCCTGGACTTTTATGATACAAACTGTAGAAAGTCATGTGACTCATTTAAACAAGTTAAACAAATTCAGTGGTACCACTGTCGTGTAATGCGAcacaatcaaaacataaaaataaaaagtttctTACTCTGCGGTTGAACTTGAATACTTTTTAATAACCCGTCTCCAAATTTGAAAAGAGACAGCTGTGATGAACAGTGTGCAAGACCTCTTCTTTCCTACACAGTTTCCATTTTGGTGTTCTCCCAACGACACAAACTTGAGATTTCCaaggaaaaagaaatacaaaaatctataaaataaactctGTAACTCCCCTTTTGCAAACATGCAGCTCTTTTGAATATATGGcccattttttCAAAGTCTTGTTAAGTCAGCTGAttcaaaaaccttttaaaacagaaaacaaaagcattgcCGGCCTACACTCGTGTCTGacataagttaaataaaacatatcccGTTGTAAAAATAAGaacttaaattaaatagtttcagtgtttatttctatttttgccttgataaaaataacatgaattaaaaaaaaggtaatatTATTAGTTGGTCCTTCTCCCTGATAGgcatttgattgattttgacGTTGTAGCTTGTTTGTCAATGCTACAATAATTAGAAAAAACCTTTTACTGTAGTCCAGGTACagattaataaattacagaatgtttctttttttaaacagatgatTGATGAGCATGTATTTGGGATAATATATACCCACATTATTATACTGTAGATCTGTCAGTTTACAGTGCATAAAGCTCAGAAAAAAGTGTccaaaataatttagaaaagcatcttcaaataagagaaacataaaaagaaaaacaagaaatgtttgAGAATGTAAAAGTTTTTTACCCCTTTGGGATGCAGTAGTATTTGTAGTAAAGCAGGAAgatatacattgaaatacaagtACAACTATATACTGTTAGATGACTTTTAGATAGATCTctgttgaatgaaaaataaaatattccttttGCAGCAAGTTTAAATATATGTCAGGATTGGAAGAGCTTATTCAGATGATGTATTAAAATAGATTACCTCATATCATATAGGACTTCATTATAGAACtattgctttgaaaaacaacTTGGCAAAAGGAGATATATTGTCAACTTTGATAGtgagttaatttaaatatgcagtGCTCTCAAAcggttttaaaaaatgaaaaaacaaagatggaAATTGAAATGATATTGTTCTATTGGTATTTgctaattcaattttaaattatactcAACCAATTAAGTCTTGAGCTGTCTAAGAACTAGTTGAAATTTGATGTACTGAAAATTGGAATTGCACAGTTACCTTGAGTACATATAAAGAGCATTGTATCGACATTTCAAATGCGCCAGACAGgtgtattatactgtacattAGATCCAAAACACCCTTCTACTGTATAATGAACATCCTCTTACACTCGTACGGTCATTCTTTATCAGTTCAATATATAGTTTACGACGACGTCCGTTTAAAAAACGTCATCGGTTTTTAGTTTTACACTTGTCTTGCGAATGGCAATCAATTATAACAACTGAACTATGaatctaaactaaactaaaaaccCAAAGCAATGTCAAATATAGTTCTTGCTGTTGAATATTTACAGTCCGAGTTTTAGTTTCCATCGTTTCGTTATGGAGACCAGTCAAAAGGGTTAAGTATGAACACAAGATGGTGTTGTCAGTCATTTCCAATAAACCATTGTAAACATCTTCACCAATGCAATGACTTAGACCAGGAGtgtattgcatttgtttccAGTTGAGTTTCTTTTAAAGTCTACTCAGATTCAGTCTCTCGAATGACACGGCTGTATCAGACACTCCTCGGTGCCCTCTCGAGTTCATGGGTCCGCCTGTTTCTGCCCTTCTTGTTTTCCTGAAGGTGTTTCCATTTGTTGGCGTGCGTTTGGGCATTGGCAGCTTTCTGTCTGCGCTGCTTGCGTTCCCTTTTCCACACCTGCTCACAAAATTCATCCATAGTGTTGAGGTTAGGATGGTTAATGAGGGACATAAAGTCTCTGTACCAGACTTTTTGGTTGGGTGGGACGATGCCGTGGCCCTCCTTTGGTTTCGCTCCTTCACCTTCTTCATCCTTGTGCAGAAGCTCGTCCAGGTGCTCGGTGTCAATAACCTCGAGGGTGACCTTGACCAAAGTCTGCATGAATCCATGCTCGACTGCATGGCAGTAGTAAATCCCTGAATCTTTCTTGTGCAGGCTGCGGATGAGGAGGCCTTGTTCTGTGCGTATGAATCTTTCCTCT

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140557 True 4577 lncRNA 0.36 2 19095628 19100398

Neighbor

gene id symbol gene type direction distance location
AMCG00006752 LOC107577127 coding upstream 695437 18368664 ~ 18400191 (+)
AMCG00006753 NA coding upstream 756171 18317693 ~ 18339457 (+)
AMCG00006750 NA coding upstream 1130857 17963401 ~ 17964771 (+)
AMCG00006751 NA coding upstream 1153404 17938902 ~ 17942224 (+)
AMCG00006748 NA coding upstream 1230970 17860132 ~ 17864658 (+)
AMCG00006769 LOC108263977,LOC108444204,LOC107665551,LOC107559415 coding downstream 436935 19537333 ~ 19541966 (+)
AMCG00006772 grm3,LOC107090533 coding downstream 455005 19555403 ~ 19568758 (+)
AMCG00006770 LOC106594134 coding downstream 510921 19611319 ~ 19621286 (+)
AMCG00006771 NA coding downstream 535719 19636117 ~ 19642171 (+)
AMCG00006779 NA coding downstream 546732 19647130 ~ 19650694 (+)
G112207 NA non-coding upstream 192085 18900939 ~ 18903543 (+)
G112182 NA non-coding upstream 350411 18695159 ~ 18745217 (+)
G112181 NA non-coding upstream 401317 18693878 ~ 18694311 (+)
G112106 NA non-coding upstream 880580 18214793 ~ 18215048 (+)
G111941 NA non-coding upstream 2232273 16863156 ~ 16863355 (+)
G112259 NA non-coding downstream 295519 19395917 ~ 19396197 (+)
G112275 NA non-coding downstream 395136 19495534 ~ 19495765 (+)
G112295 NA non-coding downstream 526415 19626813 ~ 19628164 (+)
G112302 NA non-coding downstream 532841 19633239 ~ 19635224 (+)
G112305 NA non-coding downstream 543253 19643651 ~ 19645956 (+)
AMCG00006672 NA other upstream 5156153 13933666 ~ 13939475 (+)
G111197 NA other upstream 6052180 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 6443813 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 6772350 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 9527352 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 1837099 20937497 ~ 20944977 (+)
G112567 NA other downstream 1947938 21048336 ~ 21049038 (+)
G112600 NA other downstream 2042467 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 2164855 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 2517234 21617632 ~ 21622508 (+)

Expression


Co-expression Network