G112305


Basic Information

Item Value
gene id G112305
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19643651 ~ 19645956 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140640
CTGTGCCAGTTTCTCTTCTATGGAGCAGTTGTGCCCTTGGGACTGGTACAGCTCCAGGCAGACCGAAGAGAGGCTCCCTGGACTCTGCAGAACGTGCTGCCTCCTTGCAGGCAGAGGGGTGCCAGACGGTAACAAAACTGTATAGATGTCCGCCCCCGAATCATCAGCCtcctggaagagagagagaatgagggagAATGTTTTATTAGGTTGAAAATCCAAACAAATGTTACACTGCTGAACATCACTTTTCCATCTCTCCTCATTACCTTGACAAGAATATCCTTGGCACAACAATCCACCGTTATAGAATCCTCCTCCAGGGCGTCCCTCCCCAGCAGCAACCCGGCCTCAATGGCAGCACCAATTGGAATGACTTCATCGGGGGGGATGGAATTCAGAAGCTCCACATCTGGAAACAGATCCCGAATCATCTGCTGGAGCTTGGGGATCTTTGCAGAGCCCCCACACAGCACCACCTAGCAACAGAGCAACACGCTAGTAAAACCTCAGACTGCTTCATTTGGCCTGCCTaccatttttaaatcagttctTTAAATAgatgtgcatttattatttaatggtgATATGCCTTCGTTTTTCCTTCTAAATAAGACATCTACCAAGTTGACAAGCTATTCTATGGAAACACTGTCTTCCAAGAACATTTCAGTGCAAGACAAGTTTAAGACTCAAAAATCcttataaattatgtatttcaatgttttacCTTACTGACGTCATTTGTAGAAAGACCGACTTGGTCCAAGAGATTTTTGATTGGCTGTATACTCTTATTAAAAAGAGTAGAGCATACAAGCTCAAATCGagccctAGACATTGCAGTCAAAGTCCATTCCATCAAAGAGAGAGTCGACAAAACAGTTTGAGCTCCCCAGAGTAGAGAGGGTGTGCTTTGCAACCTCTGCGCTGTTCATCAGCTTCAGCATAGCTCTAGGATTGCCCGTGATGTCATGTTTATAGGTTTTTAAACTCAGATGCTAAATATTGGGCGAGAGCCTCTGAAAAACTCTCTCCACCAATGCTGCCGTCGGACTGTGTGGCCAGGACTCGATACAGTCCACTGTTCACCTCCATCACCGTCACGGACAGGGACGTCCCTCCAAGCTTATAAACAAGCACGTGGCTTTTCCAGTTGGAGAGTCTTGGCCAATCCCATAAGCCAACAGTGCCGCTGAAGGTTCATGAATTAATCTCAACACGTTGAAACCAGACACCTCCGCTGCTTGTCTAAGAAACAAACCAGAGACAGAGGGCTTGACTTGAACATTTGTAATCTATTGCAATGTCTCTATAAGCTGTTCTTTACTGAACACATACTAAGCAATTCTTTATGGTGCTTAAAACCAAGGTACTGTTAATATGTTACCGTAGCGCATTTTTCTGAGCCTCTCCAAATTCAAAAGGGACTGTAATGACGGCATCATTGACATCTGATCCCAAAGCAGACTGTGCGGTTtctgaaacaaatcaaacaattataAAGTTAGAAAGGCCTGCCAGAATGAAGTGCAAACCTTCTGCTTAGTCCGTGATTTCTGGATGAATCAATCAAGTTAGTAAAGGAACACACACAACCTGTAATTCTGTACCTAATTAAAGATGCAGAattagttttacatttctgtcatcAATCTGCAATTGAAGAGAGCATTGACAAAATCCTAATTGTACGAAGAGTAAACCTTAACACATGCCGATACGTTTAGTTCCGAGAGGCAAGCTTCTTCCCATGTAACACTCACctttcatctttttaaaaatcaattttgcCACATCATCCGGCGAAACTAATTTGGTAGAGTCCCCAGTGTCGATCTCATACTTCGGCTTGTCATCTTTATTGACAACCTACAAACACATAAGATAAAgtacatgttgttgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140640 True 1908 lncRNA 0.43 4 19643651 19645956

Neighbor

gene id symbol gene type direction distance location
AMCG00006771 NA coding upstream 1480 19636117 ~ 19642171 (+)
AMCG00006770 LOC106594134 coding upstream 22365 19611319 ~ 19621286 (+)
AMCG00006772 grm3,LOC107090533 coding upstream 74893 19555403 ~ 19568758 (+)
AMCG00006769 LOC108263977,LOC108444204,LOC107665551,LOC107559415 coding upstream 101685 19537333 ~ 19541966 (+)
AMCG00006752 LOC107577127 coding upstream 1243460 18368664 ~ 18400191 (+)
AMCG00006779 NA coding downstream 1174 19647130 ~ 19650694 (+)
AMCG00006778 fam107b,LOC102787157 coding downstream 51475 19697431 ~ 19706930 (+)
AMCG00006783 NA coding downstream 226050 19872006 ~ 19874589 (+)
AMCG00006781 NA coding downstream 238766 19884722 ~ 19933196 (+)
AMCG00006784 NA coding downstream 303185 19949141 ~ 19955839 (+)
G112302 NA non-coding upstream 8427 19633239 ~ 19635224 (+)
G112295 NA non-coding upstream 15487 19626813 ~ 19628164 (+)
G112275 NA non-coding upstream 147886 19495534 ~ 19495765 (+)
G112259 NA non-coding upstream 247454 19395917 ~ 19396197 (+)
G112233 NA non-coding upstream 543253 19095628 ~ 19100398 (+)
G112350 NA non-coding downstream 294537 19940493 ~ 19940975 (+)
G112380 NA non-coding downstream 337049 19983005 ~ 19983296 (+)
G112424 NA non-coding downstream 630037 20275993 ~ 20276232 (+)
G112430 NA non-coding downstream 891987 20537943 ~ 20538220 (+)
G112435 NA non-coding downstream 917101 20563057 ~ 20563275 (+)
AMCG00006672 NA other upstream 5704176 13933666 ~ 13939475 (+)
G111197 NA other upstream 6600203 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 6991836 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 7320373 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 10075375 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 1291541 20937497 ~ 20944977 (+)
G112567 NA other downstream 1402380 21048336 ~ 21049038 (+)
G112600 NA other downstream 1496909 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 1619297 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 1971676 21617632 ~ 21622508 (+)

Expression


Co-expression Network