G112410


Basic Information

Item Value
gene id G112410
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20078891 ~ 20079411 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140765
tacttgtgattaaaattttaaaaatcaattcttaaaatcaatttaaaatttttaaaatctttgtgattaatataaacaattacttgaactcaaataaacaagtgcacaaaacaacaaaacaaacgtgattaaagcaaactgctaccaacaaaaaagtcaaatacattgaaaataactgaaaatgcaccggacaaaataaaaaaacaattaaacaggtaaaaataaaaaacaaaccaaaacggtccaatgcatttaaaattaaatccaaacggtcaatgtatttgacaaagaaataaaacaaaactaaccaaaaaaaaaaaccaaaacaactagtgctttaaaaacaactaaatctttaaaaacagttaaaattcatttttaaaagtcattttaaaaaacaatcattcataaaaagggttaaaagatcttggactcgggctccagcagggggaaatGACCGTTCCCgcaggtgggtcccatcatgggatcctgagctcccccagatcttgtatctgCCAGTT

Function

NR:

description
PREDICTED: calsyntenin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140765 True 521 lncRNA 0.29 1 20078891 20079411

Neighbor

gene id symbol gene type direction distance location
AMCG00006795 LOC102794702 coding downstream 25083 20047941 ~ 20053808 (-)
AMCG00006789 NA coding downstream 79390 19986747 ~ 19999501 (-)
AMCG00006788 NA coding downstream 94454 19982166 ~ 19984437 (-)
AMCG00006790 cpt1b,LOC100329197,LOC106573415 coding downstream 97456 19971627 ~ 19981435 (-)
AMCG00006785 prpf18 coding downstream 131194 19941057 ~ 19947697 (-)
AMCG00006796 rabl2b,rabl2a,LOC107662875,LOC107600941 coding upstream 495386 20574797 ~ 20578476 (-)
AMCG00006799 odf3b coding upstream 532959 20612370 ~ 20617950 (-)
AMCG00006800 NA coding upstream 548121 20627532 ~ 20637604 (-)
AMCG00006805 zgc:77650,arf5,LOC107559620,LOC107599973,LOC105888566,LOC107599983,LOC105912562 coding upstream 576842 20656253 ~ 20666945 (-)
AMCG00006806 dennd6b coding upstream 609981 20689392 ~ 20707958 (-)
G112292 NA non-coding downstream 509219 19568517 ~ 19569672 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding downstream 512876 19564956 ~ 19566015 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding downstream 536923 19541103 ~ 19541968 (-)
G112288 LOC108263977,LOC105018424 non-coding downstream 541098 19537205 ~ 19537793 (-)
G112287 NA non-coding downstream 563887 19514799 ~ 19515004 (-)
G112496 NA non-coding upstream 634672 20714083 ~ 20756786 (-)
G112557 NA non-coding upstream 917855 20997266 ~ 20997529 (-)
G112562 NA non-coding upstream 935962 21015373 ~ 21016048 (-)
G112563 NA non-coding upstream 937790 21017201 ~ 21017740 (-)
G112568 NA non-coding upstream 945295 21024706 ~ 21031872 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 442966 19633093 ~ 19635925 (-)
AMCG00006773 tmem243b,tmem243 other downstream 446996 19623155 ~ 19631895 (-)
AMCG00006754 NA other downstream 1712329 18339270 ~ 18366562 (-)
G112059 NA other downstream 2445446 17632891 ~ 17633445 (-)
AMCG00006719 NA other downstream 4182022 15881130 ~ 15896869 (-)
G112420 NA other upstream 156445 20235856 ~ 20236206 (-)
AMCG00006807 NA other upstream 567909 20647320 ~ 20653659 (-)
AMCG00006813 NA other upstream 774646 20854057 ~ 20964562 (-)
AMCG00006841 NA other upstream 2051084 22130495 ~ 22197664 (-)
AMCG00006854 NA other upstream 2873765 22953176 ~ 22958306 (-)

Expression


Co-expression Network