G112430


Basic Information

Item Value
gene id G112430
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20537943 ~ 20538220 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140786
gtgatgatctgggggtgcttcagcaaggccgGAATCGGgacagatttgtctttgtgaaggacgcatgaatcaagccatgtacaaggttgtcctggaagaaaacttgcttccttctgctctgacaatgttcctcaactctgaggattgttttttccagcaggacaatgttccttgccacacagccaggtcaatcaaggtgtggatggaggaccaccagatcaagaccttgtcatggccagcccaatctccagacctgaacccgattgaaaacctctgga

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140786 True 278 lncRNA 0.50 1 20537943 20538220

Neighbor

gene id symbol gene type direction distance location
AMCG00006794 NA coding upstream 2592 20531355 ~ 20535351 (+)
AMCG00006792 shank3a,LOC107710388 coding upstream 182579 20344401 ~ 20355364 (+)
AMCG00006791 NA coding upstream 275144 20262300 ~ 20262799 (+)
AMCG00006787 NA coding upstream 490919 20015945 ~ 20047024 (+)
AMCG00006786 NA coding upstream 538195 19996524 ~ 19999748 (+)
AMCG00006793 NA coding downstream 6257 20544477 ~ 20562876 (+)
AMCG00006797 LOC104957567 coding downstream 82522 20620742 ~ 20628623 (+)
AMCG00006798 lamtor4,si:dkey-159a18.7,LOC107557308,LOC107590499,LOC107694163 coding downstream 107009 20645229 ~ 20647241 (+)
AMCG00006801 NA coding downstream 129128 20667348 ~ 20674351 (+)
AMCG00006804 NA coding downstream 137646 20675866 ~ 20692613 (+)
G112424 NA non-coding upstream 261711 20275993 ~ 20276232 (+)
G112380 NA non-coding upstream 554647 19983005 ~ 19983296 (+)
G112350 NA non-coding upstream 596968 19940493 ~ 19940975 (+)
G112305 NA non-coding upstream 891987 19643651 ~ 19645956 (+)
G112302 NA non-coding upstream 902719 19633239 ~ 19635224 (+)
G112435 NA non-coding downstream 24837 20563057 ~ 20563275 (+)
G112436 NA non-coding downstream 25278 20563498 ~ 20563788 (+)
G112438 NA non-coding downstream 27306 20565526 ~ 20571427 (+)
G112465 NA non-coding downstream 100476 20638696 ~ 20638986 (+)
G112470 NA non-coding downstream 109158 20647378 ~ 20725442 (+)
AMCG00006672 NA other upstream 6598468 13933666 ~ 13939475 (+)
G111197 NA other upstream 7494495 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 7886128 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 8214665 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 10969667 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 399277 20937497 ~ 20944977 (+)
G112567 NA other downstream 510116 21048336 ~ 21049038 (+)
G112600 NA other downstream 604645 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 727033 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 1079412 21617632 ~ 21622508 (+)

Expression


Co-expression Network