G112435


Basic Information

Item Value
gene id G112435
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20563057 ~ 20563275 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140791
CCCCTATTGCCCAGCCCCTTCCACCCACTCACCCACCCAGCCAGCTAGCCAGTCAGCCAGCCCATCTGTCCGGAGTGATGTCCTACTCTGCCAAGTGAATGTTGCATGAACTCCACTAGAACGTCCCGTCTGTGAATGCTTGTTGTCactgccccccccagccccagccccattTTCCTTCCCCGCACTCTCACGTTTTTGGCCTCTGAAGGTTTTCCA

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function
GO:0140103 catalytic activity, acting on a glycoprotein molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140791 True 219 lncRNA 0.58 1 20563057 20563275

Neighbor

gene id symbol gene type direction distance location
AMCG00006793 NA coding upstream 181 20544477 ~ 20562876 (+)
AMCG00006794 NA coding upstream 27706 20531355 ~ 20535351 (+)
AMCG00006792 shank3a,LOC107710388 coding upstream 207693 20344401 ~ 20355364 (+)
AMCG00006791 NA coding upstream 300258 20262300 ~ 20262799 (+)
AMCG00006787 NA coding upstream 516033 20015945 ~ 20047024 (+)
AMCG00006797 LOC104957567 coding downstream 57467 20620742 ~ 20628623 (+)
AMCG00006798 lamtor4,si:dkey-159a18.7,LOC107557308,LOC107590499,LOC107694163 coding downstream 81954 20645229 ~ 20647241 (+)
AMCG00006801 NA coding downstream 104073 20667348 ~ 20674351 (+)
AMCG00006804 NA coding downstream 112591 20675866 ~ 20692613 (+)
AMCG00006803 NA coding downstream 158528 20721803 ~ 20751442 (+)
G112430 NA non-coding upstream 24837 20537943 ~ 20538220 (+)
G112424 NA non-coding upstream 286825 20275993 ~ 20276232 (+)
G112380 NA non-coding upstream 579761 19983005 ~ 19983296 (+)
G112350 NA non-coding upstream 622082 19940493 ~ 19940975 (+)
G112305 NA non-coding upstream 917101 19643651 ~ 19645956 (+)
G112436 NA non-coding downstream 223 20563498 ~ 20563788 (+)
G112438 NA non-coding downstream 2251 20565526 ~ 20571427 (+)
G112465 NA non-coding downstream 75421 20638696 ~ 20638986 (+)
G112470 NA non-coding downstream 84103 20647378 ~ 20725442 (+)
G112510 NA non-coding downstream 204261 20767536 ~ 20773066 (+)
AMCG00006672 NA other upstream 6623582 13933666 ~ 13939475 (+)
G111197 NA other upstream 7519609 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 7911242 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 8239779 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 10994781 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 374222 20937497 ~ 20944977 (+)
G112567 NA other downstream 485061 21048336 ~ 21049038 (+)
G112600 NA other downstream 579590 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 701978 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 1054357 21617632 ~ 21622508 (+)

Expression


Co-expression Network