G112438


Basic Information

Item Value
gene id G112438
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20565526 ~ 20571427 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140795
aaaaaagtgaatgtttggCATATATGCATAGTTTGCCACCTGTCAACGATGGTGGCGATGGACCTTTTTATTCGAACTGAACGGGGGGATGTTTTGCACAACACAAGGTGCTATTCTGATGCCATCCATGTGCAGCGAGCGTGGGGGCACGTTTGGATTATTTCAGCACTTTCACCTGGACCCTGCTTGGGTGCAGTTAACAAAGTGTTTTCCCAGATTCAGATCCGTGATAAGATATCGAGAGACGCACCAATGAGCCATAGAAGGATAAGCCACCCGATCATCTCTGCTATATCCTCGATGTGCGAGGCACTGTGTCTTGGAGGCTGTTGTTCCTGTGCACGGGTTAGACTGGATTCGAGCGAGGCCAGGGTGGTGCCAGCTGTCAGTTGTGTGTCGCCTTACACCTGAAGGTAATTCATCTTTAGCTGTAACGCTGGCTGAAAACTCCTACACAGAAATGGCAACAACATCAGCTGGCTATGAAGCTGCGATTTTTCTTTGTTGAATGCAAGGTGTTGTGTGTAGCGATTTTACACAAGCCGGGCTCTCCATTGCTTCCCATCTGAGGCtttttgcagtgttttccaGAGTACCCTTGCCCCAATATTGACTTCAGTGCATTCTCCCACATTATTAAAGCGACCAAACTAGGGTGACAATGCAAATCAAGTGATATATTTGACATTAGCAGAAATGTACAcaataagcattacaaaagtgcagtaatacagttGATACACAATACAATTGAAGCatgacaaaagtgcagtagtataatcaatacaaaatacaataattatacatcctagttcaatgaggaaacaagtgcagacaaaatTAAGTTTAGGTGACATTACAGTGCATTGGGACAAATCAAAGATGAATTCCCAACTCTTTCAGATCTCACTGTTCGGacgcatttttttattttttttcattaaacaattcGTCTGTCTACCgaatacagatatttctgatGATGAGGACAACTTGTACTTTATATGAATTCTAAGAAATAGTATTGTGTTGGCATTGAATGAATTTATTTGgaagaacatatatatatatatatatttgggttttttaccccccaaaaaaaatcaGTCTGATTCAAACCAAGGGTCCAATCCTAAACCAAAttgtagaaaacaaatattcagttttaGCTTGCATGTCATATGATTCTAGAATCTTTTCCGGTAGTCACTAGTCCGGATTTCCGCTTGGGGAGCCTGAGTACTTGAACACTACAGTGGAATAAGCACTGAACAAATCGAATACAAGATATATAGCCAAATCAAATCAGTCCTGCTTCTAACATCATTTAAATGGATAAAATTGATTGTGGTTATACCACTGCCAGAGCTTCTATTCAAGTACTGTTAGCAATGAGGTGAGACCACTGTCTGTATTTTAACATAACTAGACTCTATTCCATAAGTGGGAGAAAACATTGCAGTAGCATCCCTAGTGCCAGAGCTAGACTGCAGTCTAATGTGCTAAATGCACCGAATGTTAATAAATGCACAGAACAGGCATTCAGGAGGGGGAAATGAAACCGCAGGAATACTGGGGAAAAAGGAAATACTGTTGTGTGCGTCTGTCCCGCGTGTGTATTTCAGTTGGGTGGAGGTGCACTggttttggtttgctttttatattcttatttttgatGGTCAGATGTGTTATGAGATGAaaatttcatgttttaaaaaaaaagaagaaaaaaatagtgCCAAAAAAGTATTGAACTGTTTTCtctatctttaaatattttatttgttgaaatGATTTTTTGAGCTGTTTGATTCAGCACTATGGTGCCATCTCCTGGAAATCTTGAGTAATACTGACATCTGCTTAGaatatttactgtatgtatataatcatTTTTGGTGGAAATACaggtttttacatttgttttagtttttttgttgttttggggggttattttattattataattttttgtttgtttttctttttttggtttcgTAAaggagtatatatataaatatataaattacattcttTTAAGGGGTAtccattaacatttttattaatattttgagaATTTTGTTTGAGCAACTCTGATGGTTTAACATATTGTTTAACTGCATCTGAAATGCTAAAGTGGATTTATTCCTGCCAACGTCTTCACCCCCGAGATCCCATAACATGTAGTGATGAAGTGAAATGCAGTTCAAATTAGTGTTGCTTTTCTGGGTTTAGGGATTATGAAGAAACTATTTACTCTCTGTTTGTACGTCAACGTTATTATATacagatgcaaaacaaaataataatttttctaaaaaaaaaaaaaaaaactttaataaacaCATCATTCACATAAAAATGTGTAGGGTCTACGTCGTCTatcttctttttaaaacaacaacaacaacaacaacaaaagcacaacAGAACGTTTTGGGTCCCAGAGAAGTGCAGAGAAATCCTGCTCAGAGATTTGAAAGGCATTAGGTTATAGATAGCGGGTGATTTCCACGATGGAAGgccttttctttcttgcacTGTGAGTAAAGATGCTGGACTTGTCAAACTAATTTCTGTCCTTTGCCTTTCAGACAAGAACCATGTATCTATCTTGCCTTCATTGCACTTTGTTCTCATCGCAGATCTGAGGCATTCCTGATTATTATAGGCACCCAATTAGATAGATAGGTTCTTTCTTTTTGACCAATCATAATTGGAACCAGAGATCCGTCATCATTCATTGcgatctaaaaaaataaaataaatatctttgtCTCTGGCATTACCAGTCACGCTTTGCTGttatagtttagttttttgtttgtttttgccattCTTATACCTTAATGTTCCGTACAATTACTTTAAATCTGACTGGCTTCGATtacaaacaatgcaaatgaATGATGTCCTTCCTGTAATTCATTAAAGGTTTAGTTGTCTTTAGAATCACTTTTGGAGAATGGGATTCCCCTTTTTCTCTTGGGTGTTCGAAGATGTGAAGaacaactttattattctttcaaGTAAATATGGGTGTCTGTATCAGATAGTTTTCAGGAAGCTACCATTGCGAATGACAGAAACGAagcagacttaaaaaaaaaaaaaaaaaagtggacactgcatttcaatatttttcctAATGCACCGTGTTCTATTGGCATTGCTTTACTTTACTTATTAAGCTGTTTGGAACAGTAAGCCATTTTATCACAGACATTTTATAACAATCATTTAGTGGCGTTCCTTTTATAGGCATAACTCTACTAGACTAATCTAAATCCTTCACCATACTTTTAATTTGCATAGCAGCTGAACAAATGTGTCACTAACTGATGGTATTCCTACATGGTCATATTACATCAAAGCAAGAAAAAAGCATCAGTCAGTATAATGACTTAAAAACAGTCAAAATCTGAAGTAATACTTGTTTTGTATTCCAATTATaggtaaattaataattttatactttatatatcCCACCCTCTCTTTCTGTCGCTGGTGTTGGGGTCCAAGAAAAAAACGTGATGTAGCAAGACGCACTCAAGAAAAGTCACAAATACTGTACAGCCAACTTTAGTTTAATTGCAGGCTCCAGAGATTGTAAACAGGGCAGCAATACATCTAGAAACAGAATAAATGAAGTGATACAGTGCATAGTGTAGCTGtcatactgtactgtgcattttaaaataatccagtATTACAGTAGACAAACTGTAAAAGTAATTACATCAAaaatttggtaaaaaaaaaaaatgaggttAATTATATTCAGAGGCATGCACATCTTAACTATAAAAAAGCGGAGACAACCTCGATATATCTGATTCAGCGATATAATAAGGGGGTggtgcatatttatattttatatatatatattaaatgttatatgAAAAGAGTGTACGCAAAATTCCACAATTGTGCATCTATCCTACAAAATCAGAAACATTGTGGATTTTGATAGGCTGTGAAGTTCAATAGGTAGATGATCTTTATAGTTTCTACAGAACATGGAAATAGCAGAAAGCAGATAATTTTGTGATGTGCGCCGTGCCATTCCAGCTACTGAGCCCCCTGGTCCTCAGAGCAGAACTGTGGAGTTCCTCTGGATTGAAGGGGGTGGTGTTGTGTAGTAGAGTCACTCACTCTGGTCCTGGACAGCCTTAATTGGACCAGGTCTTTACTCATTGGATATTTAAAACTACCTTAACAAAAAGTATGGAGGCTCTCGAGGAACAAGGCAGGAGACATAAAGTAAAAACTCAGATAGTATGCGTTTGTGATTCTGCAAAACACTACCTTTAAAAGTGAGGATTAGTAATTTGTTCCAATGGGTATTTCTGACAGGTCGATAAACAACTTTACCACTgacattacatataaaaagaaaaagacaattaattatgtttatttctgaCCTTTAAAAGGCACCTcagcatattacaaatatattttaacactacatttatttctttcatAGCAAAATGAGATTTACCTAGCAATCCAGAATGCCCACTGAATGTACAACAAAGAGTAGGAGACTCATCAGTGTGAAATGAGAGACACACAATATTACGCTCAAGTGATGGAAACTGGACCATCTTTTGTGAATCACGATCAGTGCTTTTTCAGAAAGCTATAGTACTGTACACATATACTAGGGATCAGATAGACATGTTTAAAGATTTTTCTCAATGCAATTTTCTAGTATGTATTTTGACATTGCTGCTTTATCTTGATGTGAAGCATATTTTCTATGAATGTGTCTGCTGTAACTTCTGTTTATCATTTATTTCACGGTATAACATCATCTTACAAATTATGCTTATCCACACAAAGGCTCACAAACCGCCATGCTAGAACATAGATGGCTCCTATCAAACTTAAGCCAAAAAAAGTCATCTGATGAGCTACGAAGTCCTGgggcaataaagtaaaaataaaaatgtgtgtataccATAACATTCCTGGCATTGAAATTGAGCTGTAGATAACTGAATTGACTTTGAATAAGCTAGACGAAAATGAGAAGATTCAATTAAATGGAATAAGTATTCAAATGCATCATATCCTTTGGGATTGCAGTCTAATGCCAGTAGTGAgacttaaaatgttaaatataatgaaattcAATCTAGtaagaaaaggaaatatgaactgaaatatttcacatttgtaatAGCACGGCCTTGGTGGTAAGGGTGTACTACTTTTCACCTCCAGTGTAATTTCACCTCTACGTTTATATATCTTTACCAGATTTAAAGGGGAAGTTAGTCAAACATGTATGATTAGCATTGTCCTCAAATTTGTGTGATGCTAAAACAGTAGTCTTTActtaatttatacatatatttatatatatatatatttgagttacagtgcatttatttgaaaaagggtTCAGTACTTCATCAAGAGACATGCTATTGCATTCGGTGTCAAGTTAGTGCTTTTGCAAAATGAAGATTTTACACAAAAGGATTCCTCCAATCTCTTTATCTTAATATTTAAAGAGCAAATGATTAGATTATTGTCAGACTTGAGGGGGTGGGATTGAATTCCAAAGCATTGTGCTtaagttttcattatttatgatATTTACGTCAATATGTTCGATTTGAGTCACTGCTCTCCCTACTGACAGGTGGCCTGTATAGAATGTTTTACTACAGATCAAGTTTGATGAACATTTCCTTACTTTCTGTCAGCGATCGGCTTCACCTGTTCAAATGTAGAGTTGTGCAGAATGGGCACATGCACAGAAATACCCACTCAGTGcttctctttttaataaaatatgcttcTCACCTTTTTGTAAGAGATATTATTTAGAAAATTAACATGAATTTGGGGTGTAAGGCTAGCCCTCTAACCTTGTTGTTGTGATACT

Function

NR:

description
PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140795 True 5902 lncRNA 0.35 1 20565526 20571427

Neighbor

gene id symbol gene type direction distance location
AMCG00006793 NA coding upstream 2650 20544477 ~ 20562876 (+)
AMCG00006794 NA coding upstream 30175 20531355 ~ 20535351 (+)
AMCG00006792 shank3a,LOC107710388 coding upstream 210162 20344401 ~ 20355364 (+)
AMCG00006791 NA coding upstream 302727 20262300 ~ 20262799 (+)
AMCG00006787 NA coding upstream 518502 20015945 ~ 20047024 (+)
AMCG00006797 LOC104957567 coding downstream 49315 20620742 ~ 20628623 (+)
AMCG00006798 lamtor4,si:dkey-159a18.7,LOC107557308,LOC107590499,LOC107694163 coding downstream 73802 20645229 ~ 20647241 (+)
AMCG00006801 NA coding downstream 95921 20667348 ~ 20674351 (+)
AMCG00006804 NA coding downstream 104439 20675866 ~ 20692613 (+)
AMCG00006803 NA coding downstream 150376 20721803 ~ 20751442 (+)
G112436 NA non-coding upstream 1738 20563498 ~ 20563788 (+)
G112435 NA non-coding upstream 2251 20563057 ~ 20563275 (+)
G112430 NA non-coding upstream 27306 20537943 ~ 20538220 (+)
G112424 NA non-coding upstream 289294 20275993 ~ 20276232 (+)
G112380 NA non-coding upstream 582230 19983005 ~ 19983296 (+)
G112465 NA non-coding downstream 67269 20638696 ~ 20638986 (+)
G112470 NA non-coding downstream 75951 20647378 ~ 20725442 (+)
G112510 NA non-coding downstream 196109 20767536 ~ 20773066 (+)
G112535 NA non-coding downstream 348100 20919527 ~ 20923505 (+)
G112541 NA non-coding downstream 358807 20930234 ~ 20934218 (+)
AMCG00006672 NA other upstream 6626051 13933666 ~ 13939475 (+)
G111197 NA other upstream 7522078 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 7913711 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 8242248 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 10997250 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 366070 20937497 ~ 20944977 (+)
G112567 NA other downstream 476909 21048336 ~ 21049038 (+)
G112600 NA other downstream 571438 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 693826 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 1046205 21617632 ~ 21622508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location