G112470


Basic Information

Item Value
gene id G112470
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20647378 ~ 20725442 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140833
TTTTCCATTgagattttttgtttattgtgagTCTTCCTTTCAATAGTATTTCTCATTTAGATTTCACAAGGGACCCCTTAATTTTACTGCCAAAAGTACAACAGAAGAAATAGAAAGAATTGGCATTCATCATAATAGCTCCTCTAAAACAGTAACCATATTTAAATTCTTAGATTTGGAATTATACTCCTCAATTAACTTTCAGAGCCGAATATGTGTGAGCTGTgtgcataaaatatattaaagagtGTTTCATTATGACTTATGATTAcgacttttttattgtttgcagGTACAGCTGCTGCTGAAGGACAGAATGAcaccacacattttcaaatcagtttcagatttttctttttttattcatttatttttttaagaaaacaatgcgTCCCGCCTTGATTATAAAGTCCTGGGCGAAATTAAGTCATCTGAAGACAGTTTTAGGAGACTTGGGCCCGGACTAAACCCACACTTTAACCCACCTGCCAAAATGTGTTGGCAGGTGGGTTGGAGATGCGTTTGGGTCCAGGTCTATGTTACTTTCCACTGTTCTTTGAATAACTGGCATTGTGGTCCCAGGCATTCCAAAGTGATCGTGTTTTCCCAGTGGGTTCCCTCGACCCACCGAACCATGCAACGCAGACAAACCAGAAGCTAAGGGAAAGGGTAAGGGAAATTTTCTGGTTGTTTTTGTAGGATGCTTCTGTGTCTTTGTCACGTTGATACGCTGCTTCGAGGTCAGTGCTTTCACGCTTTAAGATCTTGACAAGCTGTGACACTGGATCTGCCCACCCACATCCCTGACTGGGACATGGTCTCCCTGTCGTGGGAACAGGGATATcgccttctcctcctCTGAATAGGTTTAAGCAAGCAGAAAAGGATGGGCCCTCATCGTTAAAGGCACCCTgtaagataaatacataatataatgtaGTTAACAATACAGTCAATAACAGCTACCCCGCCCTACAGAGAAACACTTTTAAAGAGCTTACACCCACTTCCCTGGGAAATCAAAGCTAATGCAAAGCAGTCAACAGGTCTCAAGACTCATTTCCTTAAGGTTAATGCATTCAACTTCAAAATGATAACGATTTAAAATCTTCAGCAATGCCCAGATATATTGCCCGTGCCAAGTTTAATGACAGTAAATAGTGTAGATCTtccaaaataatatgaataatgaaaaagcaaataaataaataaataaataaaaatacaatacacccCTTTTGTACACAGTATTCCCTTACAAGGACATGGGCTTTATTTAGAAAACAGTAGAATGACATGTTGGAGAAGTAGTTTTAAATCCCTTATACACTCATTTGAAGAATGATAAATAACAAGCATATTACAAGCaagacaaacacagaaatacaatataaaacaaaaatgtgcattatttgtgTCATgcatgtaaaaaacaacaacttctaAAGCAAacagtatttcattttcagtcttcttcagttttaatatatatgtgtatgaatACAGGTTATTTATTAAAACCAGACTCACCAGTCACGGCCTCCCTGCGCAGCAGCTGTGCGGGATGAAGAGACAGACGCACGCAGCGCTGCTGTTTATATACGGGCCGCACGTCATCTCACAGGCTCCACCCACACACCTATAATGCcccattttattgtttttagcaGCAATGACACAACAATTCAAAGTTGTTATACATGACCGttcattaattttaaagtaaaatcctGTAAAATAgggtttacatttctgtttgttactCCCCGGACGCCGAC
>TU140836
tattgtttcacatttttctatttttattattttttaaagcaggaaGATATGCAGAATGccttttttttcacatcacttttttttttttttttttcagtttcagatttttctttttttattcatttatttttttaagaaaacaatgcgTCCCGCCTTGATTATAAAGTCCTGGGCGAAATTAAGTCATCTGAAGACAGTTTTAGGAGACTTGGGCCCGGACTAAACCCACACTTTAACCCACCTGCCAAAATGTGTTGGCAGGTGGGTTGGAGATGCGTTTGGGTCCAGGTCTATGTTACTTTCCACTGTTCTTTGAATAACTGGCATTGTGGTCCCAGGCATTCCAAAGTGATCGTGTTTTCCCAGTGGGTTCCCTCGACCCACCGAACCATGCAACGCAGACAAACCAGAAGCTAAGGGAAAGGGTAAGGGAAATTTTCTGGTTGTTTTTGTAGGATGCTTCTGTGTCTTTGTCACGTTGATACGCTGCTTCGAGGTCAGTGCTTTCACGCTTTAAGATCTTGACAAGCTGTGACACTGGATCTGCCCACCCACATCCCTGACTGGGACATGGTCTCCCTGTCGTGGGAACAGGGATATcgccttctcctcctcctAGTTCCCTTTCA

Function

GO: NA

KEGG:

id description
ko00280 Valine, leucine and isoleucine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU140833 True 1778 lncRNA 0.38 2 20650704 20652823
TU140836 False 629 lncRNA 0.43 3 20647378 20725442

Neighbor

gene id symbol gene type direction distance location
AMCG00006798 lamtor4,si:dkey-159a18.7,LOC107557308,LOC107590499,LOC107694163 coding upstream 137 20645229 ~ 20647241 (+)
AMCG00006797 LOC104957567 coding upstream 18755 20620742 ~ 20628623 (+)
AMCG00006793 NA coding upstream 84502 20544477 ~ 20562876 (+)
AMCG00006794 NA coding upstream 112027 20531355 ~ 20535351 (+)
AMCG00006792 shank3a,LOC107710388 coding upstream 292014 20344401 ~ 20355364 (+)
AMCG00006802 NA coding downstream 34985 20760427 ~ 20767061 (+)
AMCG00006809 miox,LOC102303880 coding downstream 183272 20908714 ~ 20918410 (+)
AMCG00006815 NA coding downstream 362919 21088361 ~ 21102151 (+)
AMCG00006818 NA coding downstream 451106 21176548 ~ 21200739 (+)
AMCG00006822 NA coding downstream 618200 21343642 ~ 21354607 (+)
G112465 NA non-coding upstream 8392 20638696 ~ 20638986 (+)
G112438 NA non-coding upstream 75951 20565526 ~ 20571427 (+)
G112436 NA non-coding upstream 83590 20563498 ~ 20563788 (+)
G112435 NA non-coding upstream 84103 20563057 ~ 20563275 (+)
G112430 NA non-coding upstream 109158 20537943 ~ 20538220 (+)
G112510 NA non-coding downstream 42094 20767536 ~ 20773066 (+)
G112535 NA non-coding downstream 194085 20919527 ~ 20923505 (+)
G112541 NA non-coding downstream 204792 20930234 ~ 20934218 (+)
G112564 NA non-coding downstream 297491 21022933 ~ 21023279 (+)
G112566 NA non-coding downstream 298837 21024279 ~ 21031984 (+)
AMCG00006672 NA other upstream 6707903 13933666 ~ 13939475 (+)
G111197 NA other upstream 7603930 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 7995563 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 8324100 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 11079102 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 212055 20937497 ~ 20944977 (+)
G112567 NA other downstream 322894 21048336 ~ 21049038 (+)
G112600 NA other downstream 417423 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 539811 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 892190 21617632 ~ 21622508 (+)

Expression


Co-expression Network