G112510


Basic Information

Item Value
gene id G112510
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20767536 ~ 20773066 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140886
CATTCAGTTCTCTTGATACAGTTTATTCAAATCaggttaggtttttttttttcttccccccactTCCTCTAGGCACAATACAAGGAGTCTGTATGTGTAACACAAGACACAGAACTAAAATCCATATCCATATTCTAGattttgttcatgtattttaagGTGTGAAACGCTACTGgctacaaaaaaaattatatatatgtatatatatatgtatatatatatatacacacacacacacacccaatgggaaaacaaataacttaaaactatacaaaactgTTTATAACAAGAACATTCAGTTCCTCTATAAAAGGAAAAGTGTATTTCTGAGATGTTTTCATAAAgggaaaattataaaaatgttgctAAAAGATGCAGAACATGTAAATTGCATAAAACGAAGCCCTGTTCCACCTGACATTGCAAATTGAGCACAGAAGACCTAAAACTGATATTACCACCACATGGGGTAAAGAAACAGCCACTGAAGAACTGGATACATATGGAAGTGTATCCCCGGATATGAATCTCCTTCCGTCACTGTGTGTACAGTTGTGTACATCACACTTCAGGCATAAATTCGAACAATACATCTGACAGGGATATTGGTAGTCTAGGGCACCACCCCTGAATtcagtaaaaaagaaaaagctgaacATCTTATTGTCAGTCAAGTGGCTTTTTAGCAGGAGTCTAGAGCACACTAAGAGTTTAAATAAGGTCACAATAACCATCCATCTTCAGTAAATCACATGCAAATGTAATCTACCGTGGAATCTAAGCAAATTACACctcccctcccaaaaaaaaaaaatattttgaatggaCAAAATCTACAACTTAGAGGTCTTAGCTAGACTGTATAATCTGTGCTTTTGAAACTTGCAGTCCCAAGCCCCCCAAtgttaaacaaaaactaaatggtGAACACCCAATGagatatgtacatttatttgactGGGTTGCCTGAACATCCTTCTGAAAGTTTAGAAGAAATGAAatgacagattaaaaacaaagatgaaaacAGACAATACCACCAAATATTAAACCCAgaatgtttgttgtttaatcctaaaaaaagaaaaaagaaaatatggacATGATTGACAACATAACCTGGCTCAGAATAtttatggaaaaagaaaaaaaaaaaagcagctgaTGTTCTACACACCCCTCCAGACTAGGGAATAATTTACTCGCTGATGTTTGCATAGGAGAGTGGAAAACTACGCAGCCAGTGACAGTCGGTGTCAAATTGTCGATGGTGCGACACACAAGGTGAAGAGAGGGGCCGTTTTcctgaaatgaaaactaaattaaactgaaggTAAATTATTCCCTGAAAAATTAAAGGTTTGTTTCTTGGCCTGAAGACGACATAGTTCTTCTATGTCAGAAGCAGATTAtatactaaaaaaaatatatatgcaggtTTCACTTTTGTgtaagaacagaacagaaagaaagagtaGCAGTGTTAATACAGACATAAACAATGGCACATATTGGGAagctactaaaaataaaaaagtgatgtTTAAAGGGCAAACTTTCACCTTTCTTACACATGacaaagttaaataaattactaCCATACGTTACATAAAATTTAATAGTATATACAGTGATAGTTATTAGATAAACATCTATAATGAAACTGAAGTTTGACAAGACATGAGGAATACCATGTTTTTACACagcatggtgtgtgtgtgtgtgtgcatgtgcatgtgcatgtgtgtgcgtgtgtgtgtaggagtGTTTGTGTTCAAATGCATCGTTTGCCACATTTTCCAGTCCACCTTTTATAGAGCTCCAAAACAAAGCCTGGTCTCGCTGCAAGGTCGGCTCTAAGATTTAGTATCTGCTACAGcttctgttaaaaaacaacaaaaactctgTTACTTTCTTTAGCCTCCTTGGACAACAAGAGAGAATAATTACCAGTTTACTTTCCAGAGTAACACATTCTCTCGTTTATTGCCAGCCTCAGTTGACACAATTCCaaagttttccttttcaaagcaATGGGATCAACCACAGgacctctttaaaaaaaaaaacagggactCCTGtgaaaaaacttaaatataaacACTGTCGCATTTGTACTATCATACCGTCAAGAAAAGCCCTTCTAAGGCTGCCCATGAACCTCTCTAGTGAACGTCTGAATCTTATTAATAATTTAGCTCATGACATGGAGACAGGATGTTAATAACCCACTTGTACAATTACACAAAGCAGCAGCTGAGGACAAGGTGGTGAAATGAACTATAATAGcattaaatattagaaaaccCAATCATTTTTGTCTGTATTCATATTCACAGGAGCATTAGCCCTGTAGCTGATGAGGGATGAAGTTGCGGgtttttgattgatttactaattattttatttttttaaccagaaGGCCTGTTTGATTGAAATTGTCAAGTGAATGAAAGCAACACCTCCACTGGCAGAACGCATGTGATTTCTTGACCTCATTAACATGAAGAAATCTCCACTGCTGGACTACAAATACTTCTAGAAGTTCTCTTACATACATCTACACACAGAGCTAATTTAGTAGTTTCAGAAAGGTTTGTTCAAAATCAAAGGGTGTCATCAAGTGCCCATGTACTAAAGAGTGAATGAGATTCTACTTAAGATAGCAATCTTGAATCTACCCATTTGCTGGGTGAAAGACTACAAACAGTACTGCAAAAGCACTGGTGTATTAGTGACTCGTCAACCTGTGGGTAAAATGGGATTACAGCTTGCTAGGCCTTGTGGTGATGATGTGTCGAGCTGaggattcattttaaagaaagatggCAGATTTGtgtcacttttaattaaaaaaacaaaaaacaacaacaacaaaaactcagTGTGAATGATATTTCCGCTCTGCAGGAGTGTTCCCTCTGAAGAAGAGGAATGGACATCTTGCACAGTGGGAATATGAATGGTGCAACAGTGGTGCAAAAACTCCACCAGTTTGGAGGTTTTACATACTGTGTTGTTAATGGCTGTGGGGTCTTTTACATAAATTGAAATGAATTTGTCTAGTAAAACATCTCACATCTTGACAAAACAGGCTGCATATCGCTTTGTTAAGAAGCACCTGGGGGAGAAAACTGGAAACTGTGGCAAAACATCTTTACTCTGCCAATTGCCAAGTAACAATGAGTGCCTGTTCTGTATCATTACACTGTACAGATATATAATCTCTCTAAAAAGCTCTGCATGACAACATAGATTAAACTATATACAAGCTTTACAAGAATGTAACAGCCTCTAGCTAAAACACTGgtcattaataaaaaacacagctgtgagAGAGCTGAAACTGGCTGAGACGACCCAAAACTTAAACGGGAGCGCCGGCTTTCCCCCGTCATGTCTGTGTGACAGGTGTGCTGCACAGAAAGGGCTGCGACTGCATCTTACAGAGAACTGCAGTACAGGGAAGTAAACGGCAAAGGGCAAACTAACAGACTGTCTATTTAGTAACTACAGTCCCATGTAGATAAGAAGACccaattgttttttcattcaaaataactTGCTGAACATCAGGACTGCCTGAGTTTTTACTCAATACCTAACACGGGAtcctgtgtgtttttacatgTGTTAACAGTAGCTAACACGGGATCCTGTGAAACTACACTTTACATGACTGACTGGCAATGGTTTTTGACTGATGTCCAGATGGACTTGTTCATTTGGAAATTAACTGAAGCATTTGGAATGTccaatttgttttacaaatctGATTAAATCCCCCCCCCTTTTGAAATCACACAAATCATAAAAACAGTCCCTAAAAAAACCTCTTACAATAGATATTTCAAATTCATGCAGagatacatattttgtatagttttgtttttgtattactaatTATGACAAAGGTACATGTTAGCTTCCAGGAGaagtttttatttctatatattttgttctataTTTGTGTGAAGTGATCTGTGGCCCAGCGAGTTCAAGCCTCTCACAGCGGTGTGGTGTAAACAACTCTAGCATCCTCTAGTCATTATGGAATTCCCCTTTCCCATTTTCTTTGCATCTTCAATTCGTTTTCTTTTGCATAAGTAAAatagcaaaaaaatatatatccctcGTTCTCCTTATGCATCCCTTAAAATTGGAGCATTAATAGTGGtttcttacaaaaacaaaatcaaataaaaaaaggaagtgATCTCATATATTGTTGGTAGCTGCTTTGTAAACAATCAAATGAATTGGAAAGCTCTCTTTGCCAggattaatttgaatatattctCTAACTGGCATTTGTTTGACAGACACCAAGGGCAAATGCTTGTCACAAAACGCTTATGCTTTACGATTGGGTTGGTATTCAATTAACcgacatgaaaaagtagaacaCAATGGTTCACTTTTCTCCCTGTTTGTCCAGTTAGAGGACTTCCTGTATTTCTGTCCATTCAAGCAAGGCTCTGGGAAGCAGAAGTGCCCCCACCTGTTCACGGTCCTCTGAAATAACGGCCGCAGACACACTTTAATCTTAGTTGGACTGGAACGCAACTCTGTGGGCCAAAGGAGCTCCAATTACCCCCgaattagaaaaatataatacGCATAATGGGCAGAACCATATATTCCCCCAGATTAAAGTGCAGTGGACAACATACAGTAGATGAGACCGGTTCACTTGACATATCTTTTGatagattaaaaagaaaaaaatccaccCAGTATAGTGCTGACAATTAAGAGCCAAGGGAAAGATTGTGGCTAAGGAAAACACTGTCCTTATTCCTGGGAAACAAATGACAATCTCCTCAGTCTTTCCATATCATTTAGCACAGGCTCTATAGAAGAGTCTAGACAACACAAACATGGCTACATTAACAGGCCTCCTTCTTGGTCGGTCAGATGTACAGTCCTTCACTCAAGATTGGGAGTGTTGGGTTCGGTGGAGTGGCAGCAGTGGGGTGCCAGTTAGTGGTTGTGTACGTGTGGTCTGGAGAGAGCAGGATCTTGTCCAAAATGATGCAAACACCTTCTCATTATGCATTCACGAGTAAACAGTGGTCAACTAAGGTGGCTGATGGTAGCAGGATCTTACCAGGGCTGTTGTAAACAGTGACACAACAGCACAATAGCCTTGGAAGaattacaaaaaggaaaacaaaaaagataaaacactgAATTTCGGTGACGTGATATCAGCAGTTCAATGTCACCAATACTGAACAAGGTCACCCAATGACACTTCCACTCATGCTTTCGCGGGGCCTGCGACTGACCACTGGAGGTGTTCATTGTTCGTTCTGCACAGTTTCCTCTCCAGGGCTCAGTCGCATCACATTCCCCTTTTCCTGGTGAAAATGCTTTGCTTCAGCCTCCCGCACTGACGTCTTCTTCAGTTAAAGTTATTATGCATCAGACAAGCAACTCTGTATACTGTCGATCCACAACTGCGCATTATGGCTGTCTTGTGCACAGAAGTTATAGAACCTTTTTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140886 True 5511 lncRNA 0.38 2 20767536 20773066

Neighbor

gene id symbol gene type direction distance location
AMCG00006802 NA coding upstream 475 20760427 ~ 20767061 (+)
AMCG00006803 NA coding upstream 16094 20721803 ~ 20751442 (+)
AMCG00006804 NA coding upstream 74923 20675866 ~ 20692613 (+)
AMCG00006801 NA coding upstream 93185 20667348 ~ 20674351 (+)
AMCG00006798 lamtor4,si:dkey-159a18.7,LOC107557308,LOC107590499,LOC107694163 coding upstream 120295 20645229 ~ 20647241 (+)
AMCG00006809 miox,LOC102303880 coding downstream 135648 20908714 ~ 20918410 (+)
AMCG00006815 NA coding downstream 315295 21088361 ~ 21102151 (+)
AMCG00006818 NA coding downstream 403482 21176548 ~ 21200739 (+)
AMCG00006822 NA coding downstream 570576 21343642 ~ 21354607 (+)
AMCG00006825 iqsec3,LOC106609634,LOC107689713,LOC105020425 coding downstream 593328 21366394 ~ 21385133 (+)
G112470 NA non-coding upstream 42094 20647378 ~ 20725442 (+)
G112465 NA non-coding upstream 128550 20638696 ~ 20638986 (+)
G112438 NA non-coding upstream 196109 20565526 ~ 20571427 (+)
G112436 NA non-coding upstream 203748 20563498 ~ 20563788 (+)
G112435 NA non-coding upstream 204261 20563057 ~ 20563275 (+)
G112535 NA non-coding downstream 146461 20919527 ~ 20923505 (+)
G112541 NA non-coding downstream 157168 20930234 ~ 20934218 (+)
G112564 NA non-coding downstream 249867 21022933 ~ 21023279 (+)
G112566 NA non-coding downstream 251213 21024279 ~ 21031984 (+)
G112573 NA non-coding downstream 283284 21056350 ~ 21056973 (+)
AMCG00006672 NA other upstream 6828061 13933666 ~ 13939475 (+)
G111197 NA other upstream 7724088 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 8115721 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 8444258 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 11199260 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 164431 20937497 ~ 20944977 (+)
G112567 NA other downstream 275270 21048336 ~ 21049038 (+)
G112600 NA other downstream 369799 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 492187 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 844566 21617632 ~ 21622508 (+)

Expression


Co-expression Network