G112535


Basic Information

Item Value
gene id G112535
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20919527 ~ 20923505 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140931
ttaaaaattaattcaaaagtttattttattataaatacaatagagttttaaaacattttactctTTGCTTCTTTTACTTCCCTGGGTCTTTTACATTCTTTCAAAGATGAATAAGGCAGAAAAAAGGCTGTTTGCATTACGGATAGTGCACaggttgattttaaaatgaatcagcGTACTCTGGTGCTCTGGTGACTAGATTAATACAGAACCCGTCATTCTCTCCTACCAGCTGGACAATACCCTAAAACAACtgacatacatgtatataaataagttGAAAATATTCAACACAATATACATTAGATTTCTgatgttaaaaactaaaaatcatgATGACAGTCACTAACTTTACACTTAGTGGGCCTGCTGGACCACTTCCTGAGATCAAGGGTATTAAAATTCTCTGTGCACATTCAATAATTAAACAGCTTTGCAAAACAGAAGGGGTAAAAACGTTTTAGTGTCCAACATCAGAACGGCATGGTTTCTTTATCAATTAGCAATATGGTGGAAGGATGTCTGCGATTGCAAGGATTATGTTCAGAGACAAAATCATGTAACATTACACAGAGACCTTTCAACACTTGAGATTGAATGCAATAAAGTAAGGCGTGGTGAgtcaatataaacaaacatttcataGCCATTAGTGTGGGATTTTTACTTTTACCAAGCTATCTGTATTATCTTGAAGTCAGATAGTAAAGttgatttcaaatgtaatttacatattaGAGATACATTAATAACAGCTTCCAAATGTAATGTctacaatattgtgtttaatatgAACGACAACCACACTTATTCAGCTTGtatgaagaaaacatttccccccaccttacttaaattatttttctttggagATTTTCCACCCGTAACTCAAGTTCATACATgaacatgattttattttaatatattttttaaatacgaTTCACTAGGTAAATCATTTCTTGAAAGGTAGTGATAATTTATCTTGACCTTACTGAGCACAAATCActcaatcatttaaaatctaCACCCAACTCATTTATaccatcagtttttttttcacacaactACACAAAGGCTTCATCTCAAAAAGGCAGTCCATGGCTAAAGATCTATGATTTTGTGCTCTTGCGTAGTGCAATGGAAAGAATAACTTGCATCTGCCATAGAAAGAAGGAAAAGGTTACTGAATGTATTCCCATAACCAAAAGTTTGCAGCCAGGAGGCACTATTTCTTGCTGTGTTACACAACCATTTACAAAAGAGAGCTCTGGAAGCTTAtatacagaggaaaaaaaatacatcaggaCTTCACATGGAGCAAGTACCACTTCCTGTCAGCAAAAGCAGTGAGTTCTGGGAATGCAAATGAAAAGGCCTGCAGAGCagataagtattaaaataagtatagaTTATCTTGAGGATTTACCAGCAAAATAATCCATGAAGTAATGCTGAAGTTAACCTACAGAGCAAGCATCAAAATAGATggaacatgtaaaatgtatatatataaaactctACTTTTGATTCCATacctccccccccaaaaaataagaTATTGAAGCCTATTGCTTAACATTTATGATACTTGCTAGTTGAAGATAAGGAAAAAGTAATGTGGTAAAAGCTACCCACAATTGGAATGTAATCCATTATCAGTAAAGTAGTGACATCCGATTAGGAACGCCactaacaaataaacataaaacgAATGGTTTGAGTTAAAATCTGGGCTGAATTGCAAATACAGAAAGATAGAATGCAGAAATCCCACTGatattttagtaaaaataaatgcaaaattgcCTGTTTAAACAAACTGCAGGATTGTAACATGGGGAAATATATGAcgatacattattatttgagGGGACCAAATCGATTTGCCTTGAATGATTCTGAACTGAACCATTGCACTGTAGTCAATGTCTGAACCTCAAACACAATGGCATGGTTTTACCTGACAAGAAACCAAAATACAGGTCTAGAAAGAGCAAGAATGAATGGATGAAAccatatataaagtattttaaaaagagtggggaaaaaatgcCATTTCCATAGTAGTGGATGAACCCTGTAGTTCTAAAGCCAAATTAAGGAACCACTCAATTACCAGAATGCACCAACCCAACCTTATCCCTGAAGTTAAAAACACAATCCCAGATTCAATGAACTACGGTCACTCATTTGATATTACTTGCTGGTATCCACTTTGGTTTTAAGATATTGTAGTTCCAAGGATTCAGACACCAAAGAGCCACATTAGTTACACATAGAGAGTGATGCCTAACCAAGCACCTCTCACTATGGTTTTAGGATCTTTTGCATGTTCACAAACCGTGCcccccaataataataaaaaataaataaaaaaaaaacactggtgcAATTCAAGCACAGAGCAGCAACACTGGAAAAATCACTATAATCACttcataatatttattatatgtgGGAAACTAAAAACTATGCATTCCTTTGTATTGACCtaatttgtgaaatgaaaaattataaaacGCATTGACATAACCCCTCTAATGGCACTTGGGAGATGCCTTCATGTCTTCTATTGCCAGAACACAGAGCAGTAGGCAACACTTTACTTTCTTCTCTTGGTGCTTTTCTCAGAATCCATGGGCTTTTCTTCAGTAATTTCCTTTTCCTCATTGGTTGAACCAGAAACATCTTTTTTCTTGCCGTGATCCTTCTTTTCGGCAGCCACCGGCACATCCTTAGCCTTTCGGGTTTTGTTTTCAGCTACAGCAGGCTTTGGTTTGCTGGCTCGGGGAGCCCTGCCAAACAGGCCTTTAAGGACACAGATGGCCAATCCAGTGACGAACAGAGACAGCAGGACCTGGGGACCAGTGAGGGGTCCAACATGCTCACGGATACATTTTAAGGTGGCCGGGACAAAGGCTTCTGTGCTACGTTTTGCAGGTCCTTTCCTTGAGTCCATGTTGACTGAGCAAAGCTTCCAGATTGGGATCCCCCAGAAACACAGTGGGGTAAAATTCTTCAATGAACTGTCTCCGCCACCATTGTTTGGTTTGTGATCttccaataataaaaaaataaaaaacagtatgTAAGAATATTGTTTTGTACCAAGAAATCTCAACTATAAGAAATAGCTTAAATACTCACACATCATCGATGAACCAGTATTTGTAGAGTTGAGCTCGGATGAAGACAGGAGGATTTTGGCTAAATGGGTACTGAGACTCATCGGTCTGTATCAAACTGATCACTGTTAGGGAGAAGAAAGGAAGTTGTGTGATGTTAAAACGGAAGTTGGGTTTTTGTTCCTTCCGTGTCCCCATGGTTTAGCCAATTTCAGCTCTCCTCTGAGGGTTGTCTATAGGCAGACATACGAAGGCTGTAGGCAATGGTAACACAGGAATGCTTTAATCGGCCAACACAGTCCAGGAACAGCTCTACCATTGACCTCACCAGATTTACtccataataaaaacaaagcataagGGTCATCTCCTCACCATCCTTCTTGCCCTGCAGCAGCCGATGGACCAGTCCAGTGAACCAGGGGCTGTGCGCCTGGGGGCCCAAAGCTGCAAACCACATCTGCCAGTCAAGGCGAGGCTGGTGTGGAGCCACTACAGGGGGAGGGCCACTGACGTTACCAGGCTTATACATAAACTCAATTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140931 True 3666 lncRNA 0.38 2 20919527 20923505

Neighbor

gene id symbol gene type direction distance location
AMCG00006809 miox,LOC102303880 coding upstream 1117 20908714 ~ 20918410 (+)
AMCG00006802 NA coding upstream 152466 20760427 ~ 20767061 (+)
AMCG00006803 NA coding upstream 168085 20721803 ~ 20751442 (+)
AMCG00006804 NA coding upstream 226914 20675866 ~ 20692613 (+)
AMCG00006801 NA coding upstream 245176 20667348 ~ 20674351 (+)
AMCG00006815 NA coding downstream 164856 21088361 ~ 21102151 (+)
AMCG00006818 NA coding downstream 253043 21176548 ~ 21200739 (+)
AMCG00006822 NA coding downstream 420137 21343642 ~ 21354607 (+)
AMCG00006825 iqsec3,LOC106609634,LOC107689713,LOC105020425 coding downstream 442889 21366394 ~ 21385133 (+)
AMCG00006823 NA coding downstream 575528 21499033 ~ 21505375 (+)
G112510 NA non-coding upstream 146461 20767536 ~ 20773066 (+)
G112470 NA non-coding upstream 194085 20647378 ~ 20725442 (+)
G112465 NA non-coding upstream 280541 20638696 ~ 20638986 (+)
G112438 NA non-coding upstream 348100 20565526 ~ 20571427 (+)
G112436 NA non-coding upstream 355739 20563498 ~ 20563788 (+)
G112541 NA non-coding downstream 6729 20930234 ~ 20934218 (+)
G112564 NA non-coding downstream 99428 21022933 ~ 21023279 (+)
G112566 NA non-coding downstream 100774 21024279 ~ 21031984 (+)
G112573 NA non-coding downstream 132845 21056350 ~ 21056973 (+)
G112754 NA non-coding downstream 1128173 22051678 ~ 22058486 (+)
AMCG00006672 NA other upstream 6980052 13933666 ~ 13939475 (+)
G111197 NA other upstream 7876079 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 8267712 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 8596249 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 11351251 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 13992 20937497 ~ 20944977 (+)
G112567 NA other downstream 124831 21048336 ~ 21049038 (+)
G112600 NA other downstream 219360 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 341748 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 694127 21617632 ~ 21622508 (+)

Expression


Co-expression Network