G112568


Basic Information

Item Value
gene id G112568
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21024706 ~ 21031872 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU140975
TTTTAAAACTACATTGGGATTTTACATTCAGGGCATTGATAGAAGAAAGCACTAAGGGCTGACGTTAGGCAAATGCTTGCTGGAATAAACTTCACAACTCACTAATTTACAGATACCGGAATTCACTCATTATGTAATCCATTATCAAAGAACATCTATCTATTGTGTCAATGGGAGCATTCGTACTGGCAAATAgacatttctatatatttgcCTTGTTAAGCAAAAGAGGCAAATTACAATTCCCAAGTAGGAATTCCATAAGATTTCTGTACCAGGAGGAAAATACTGTTTAGATCAAAAGCTTTTTAGAAGAAACCGCCCATTTAATGAAGGGCGTTTTAAAATTGCACTGCCATGCTATTTTCATGTGCAGTACTTAGTATAGTTGGCATTGTTTTACTCATGTTTAAAAGTATAATgtgtggttaaaaaaagaaaacattaaaatatcagtaaaatacatCAGTAAAAAGTTGCACtacaaataatgttttgaatcataaccaaaacaaacatactgtgatttaaatgtttgatcATGTTTTGACTTTGCTGTATTCAGTGACTGAGCTCATTTGTGAAAGGTGCTGGTCACCAGGCTATTGGACAATTTATTAACTAAGATATTAGTCAATAGCGAGAGCAAAGCGTGCCAAGCGTATAGTATGTCATTCATGGACTGTCTATTGGTTGTGTGAAGCAAATGCACATCCAGACATTATAAAGCATTGAAAAATCTAGTTTTTACATGCAGCAGAGGGAGTGTACTTGCAATAAATGGCATAGAcgctgcatttgcattttatattaaagacaAGTAGATAACTGATGAAAATCAACCATTTCATATTTTGGCTGATTATATTTCAAACTATTTCCATAAACCTCATTTACAGCGAGAATCCTAGAAATATGATACATATTATTGAGGTTCTCTGACATCTCAGAGCAGAGAAGATAGTATACTGTGAAAGCAGGTACTCTTCAACCAACATTTCATGTGACAATAGGCAAATCTCTTAAAAGCTGTTTAAACCTTTTTTGAGGTCTTCAACATGGCAGATAAATTCTTATAAATATTCTgctacactgtatatatacaattttatgtTTCAACCTACGTCCTTTAACTAAAGCACGTGTTATTGCAAGTTATGATAGTCTTGTAAGAAAGGTGTGTTTAGTGGTTTAGCGTATGTCTTATGTTCAGGATAGAAACACTCCCGACAGCTGTGGAACTGCAGTAATGTCTAGTAGTCCTCCCTGTGTGGTGTCATGTATTTTACCTCCCTGTTTCCTTGCCTCTGCTCTGCTGAACTGTTTCCTTTATTAAACTACTCTTTCGGGGTTAGGCAGCTTTGAAAACCAATGGAAACTCACTGCTGTGAGGGAACTTGAACTCAAATGGAAAGACAGTATAGCAGAAGAACATAATCCTTCCTCTTTACTGTACAATCCTGAACAACAGGAAACAGTGCCATTTCAAAATTAGAAAGGTCTCGGATGGAACCAGTCCATTCAGCCCATCATGCCTCAGCTGGCTGTCTGTGACATAATGAGGCAACCTCTCCATCAGGATTTTCTGGCATGCTGACAGAAGAGTATTGAGTATGGTGACATGATCCTGTAACTCGGGactacatttccatttaacaCTCTGAATGACGGAGTAAATCTCGTGTAAAACCATGTATAATCCTCATAGtgtgttgatttaatttgtattccgACGGGTACAAGTTCTCATTTTCAGTCAGTttattataattgaataatatGTACTCTTTAATTTCATGACTTTAGCAAGAGGTTACGATAAGCATCATAGAACAAAGGGTAAATGTTTGGAAAAAGATCTGAATATttttaacgtttttttttttctctcaatatATTATTGACTTTTTCCTTAGGttgcagatttgtattattttaaatgttgtaattcACTTCGAAAGCCAATATGATGCATGCGTAGAGAACAGAATATCAGATATCGGCTCTAGTAGAGGGTTTGGACAGTCTGGTAAAGTGTTTTTGTGGTTGGTTGACCTCTATCCAAGAAatgaactgcattttttaaagaaCGTGTCATGAAACCTAAGTAGCAGTTAGGTCGCCTAAACAACGTACTAAACCATTAATCAAACGTATCTCTTCTGACAgaaaactgattaaaacaaagaggaaaatCCTCCTTGAATTCTAAAAACCTACAGACTCTGAGCGCAGTATCAGTACTAACGACATTAAAGACAGCATTAACAGAGTAATGTAGAGCATTGCAAGAAAATGCCATTGCGTGTATTGGCCTCAATTCATGCAACATctattgtattctttttttgCTCCTGGAATACTGCTACTGTTGCGGTGTCTATTTCACTACACCCTTCATCTTGTAGATCTGTCGTACCTCGGGAGGAGAGTTCAATGGGAAAAATCACAGTGGAAACTGGAATAGCAAACATCTAGtgggaaatgaaaatgaagatagggactgttttttttttttttcttcttcttcttctacaaTTTGATCAATGTAATGCTATTACTAGTGGTTCGCTGTCGAGAATAACCTGAATTGTAAGTTGTCATTTTTTCACAAATTTGCATTTACATGTGACTAGGGGGGGGTTGGGTGTAAAATAGAGCTGGAGCTGTCAAGGTGGAAACCGGCACACTAAGGAAAGttgccaattaaaataaaatgactgaaacGCCTAACATTGCAAATAGCATTATACTATCTATTATATCTATTTAGGTAATGCTCAGAATACTTGGGCACATGATTCAATCCGAAGTattaaagttttctttttataattgttacaatgtAAATTTTTTGAATGTGGagttataattttatttctattttgccTAACATGGAATTTCTCTAGTTTAGTTTCTCAATGATTCTAAAGCTGTTGAACTCGTTTCTAAAGGCATTGATTGGAAAACCAGCAGTGTGATGAAATCTACAAGGATAAATTAACATGCAAGGATTAAATTGAATCACAATTACAGTACAAGTTAAAAAGGGTTCAGATTTACATTTGACTTTCCCCCACTGCcttgatataaataaaatacctgttgttgtttttaatttgatattataATGACTAGTACCAAATGCCGTCTGGTTGACTGTGTTAATAACCCTTGTGAAATATTATTTGATAGAAATGTAAGACTCCAAAATGTTGCTGTGCCACAGTCTGCATGTATTAACTCTTAGGTCCCGAGACGGTACAGAGAACTGCCAGGGTAAATctatttacatttgcattgaCTGACTATGCCTGAAATAGCTGTATACTCTTTAGTTACAGTTGCCCAAGTAAAGGTTCTTTCATGGGCAATGAGCCAgaccaaaaacacaaacttttaaattattaaatgaactCAACAATAATTGCTAATTGTTCATGTTTCGCTGTTAGTACGTCGACATTGCAGATCTGTATCCAGTTGTTTCTGTGAATTCAGTTGTAATTACTGTGTGTTGCCCCCCATCCCCCGCCCCACCCCGACCCGTGCATAACCCCACAGAGCCACATATCAAACGACTGGCAGGCACTATGCGTTAGAGGCTGTTTGCTGGCTTTGACGTGAGAGTTTTCcccaaatacaatatatataaaaacatcccATTCAGTCAACCAAGGTGCTCCTATTACACAAGTAACAAAGATGAAAGGCAACTGTACTGTGCAGTGATAGAGCCGCCACCACATGTCAAGctttgtgtgttgggggtttcCTTAATAAAGTCTTGGGGGCACTGTTAGTTATTAGCTTGGTAAGGTCTACAGCTGTGCTTATTCTTTCCAATTACTCTGAGCTTAAAACCGAAAAATGACAAATGCAGCTCTGGTGAACTGGGATTGGATATAACTGCTCTGCTGACTGCTAAAGGCTGGTGGTCTGGTCTGTTTCATTGTTGTCATTGTAATTTACAAAAATTGTATAATCTTATCTTTGCTTCCATACAAGTAGGACACATTTTTAGCACTGAACTTTCACTGTCTCTGTGATCCTTCTATGAATCAGCTGAACAGggggtgatttgttttttctccaaatcCGAAAAAAGGTTGATTCTTATTTGTATGTTTCCAAAGCTATgaattcttttatttttttaaattgagtattttttgtagtttgaactatattttttacagtgctCATGTGGagcattgttttttatataaaaaagtgcaaaaatactgaattgttttctttttattccacAATGCAAATTAGGCCCTTAAGAAAAACAGCTGATTGCTGCTTTTGCCTGAAGAGAGAAACGAAAGCGACGTCAAAAGACTAAAATTGAAACGCAGGTTGATGGCAtttgcttctttaaaaataaactacctCATGTGCAAATGTCAGTTTTCCTTTAAACTGTTGAACCTAAAAAGATATGTAGCAATGGTCTTCAACCTACAGCTAACAGTTGTTTTTTGTAGTGCTTCAAATAAAGCTGTGGCGTTTTAGATATTACTGACTATGTCTATTTAGGTTTCCAATGTTTTTACTCAGTCAGGGACCTGAACTACATAACCCTTACTCccatttttcaaaacatgacatgttgaaaaaggtttatttctaacatccaatttttttaaatttataacAGCCATTTCCCTTAGTTTTAATTTACCTACATGACTACATACATAGTGAATCATCCCATCTCAAGGGAAACCCCTTTTTTTCACAGAAGCTCTTTTTTATACCCCCTAAAGATTTTAAAGACTGGGAAAAGAAAGCTTTGAACTGATCTGGAGAACTGTGTGAACTTTGCCActatatctcatttaaaagcttTAGAGGTTTATATCCAGTGGCTTGCGTATCAAATATAAACCTGTTTGACAGTTAAATGATAGAAGTACCATTCAAACAATTAGCAGGTCTTACTTATGGCAGGGAAGCTTCTATTAAGTGAATTTGATATCAGAATAAAACGTTTTAAGATGGCTTCTAGCATGGAATAAAGGTCTATTTCAGATGTAATCTTCACAATGATTATAGTAAATAGAATTAATTTTAAGGCACCAGgtaaaacaaagtaatattgtttttcttttgcttaatgcatttaaaaatctttatAAGAAACATCTGGTtcttaaaatcaaatcaaactgcTAATTCCCTGGCAGCACATCATTGACAACAACAGATTCCCCAGTAAAGTGCAGGAATACTAAGAAGCAGATATACGTGCATCCTTTCTGTATTTGAATCTgtaatggaaaaacattaattgtagTCTAAGTTACTGTGAAGTGCGTTTTGTATAATACTattttgtggatttgtttttaaattattattattattattgaattttatttttttaaagactacTGTATGTCGCAGGTGATCAAAAACTAGCGCATTATGTAAACACAGAGGGGTCAAACTAAATGTGAATGTCTTAAACAAAATCCAGACATTGATAAGGATTATCTCTTTGGCATGTGAAGACTTTTGACTGATGCATGTGACTTAGTATAACACACTGAGGTTCTGAGCGAAGAGTTTAAGTTATTTTGTGCTATATTCAGTCTGTATTATTACTTAGGAACCCCTAGAGATGAATTTAGCTAAATGAATAAACTGTACAATGTTTCCCAAGAAGGCAAGTGTGTGTGAGTCATATCTACCCTTCATCCAGCTTTCTGACATTTTCTAGACTTGATTGGGAAGAGGAGGAGTCCGACACACATTTGAGTCTTTCCTCTTTGGAGTTCATTTCAACATTTGGTGATACGCAGGCAGTGAAAGTGCTGCCCTCAGGCCCAcagggagtttttttttaattgtatttatttatttttaacattgttttctacCAAACATTGCTACAGCTGTTTATACGACACCTGGTTATTTTCCTTCCTGGCAGGCTTGTACAAATACCTGCTGGTCAGCCTCATTCCTTATTTAGACTGTGTCTCTGATGACCCTAcaggaagaacaaaaacagcaattgcTTTGGCTTGTTTGTTCCCTATGGTGTTCTAGCAATTGCTTTGATAatgtagtttttaaattgtgcttaTGGATCAAAGGGCAGACCACACCATACTGATATTGAAAAAGTACATGACAGCTGACAAAGACTTAAAGCTTTTCCTGTAAAGACAAAGTGGGGCCGAagttggaaagaaaaataaggttGATAGCTGCCAATGTTTTATTGTGGAATTCTGCTACTTAGTTATTTCTGCGATTTATTTCCTCATTACAGACCTTATAAATACAGGACATGAGGTATGCCACGTATTGGAATTGGATACAATGGTTGATTTAAGCAACCTGTACTATTGGCATTATCATTGGTTGGGGCATTCACATGTCTTAAATGTGTGGCAGAGAAGAGCagcatatttgtgtttgtttttgggaaaagcttaaaaagtaaaacatgtatAGATCAAGGCTGGGAGAACAGGGCCAAGTgtgaaattaacattaacattaattaacatCTCTAACATGCCACACTTCCAGTGGAGTATCATTTTAATCAGTGATGCCGCTTCCGGGGGAGGCTTCTGTATTttgagttttgtattttgctttctGTTCCCCTGTTTCTGTTCCTGTTTGCCCCTTTTCCCTTTACTAATTTTATTCATAATGAGAGCAGTCTTGGGACACACAAAGGCACAGAGAGATGTGCTgattatgaaaaatgtttcgAGGTATTTTTAAACTTCGCTGTACCAGGTGCCTCTCCAATCTGTTTTACAATGGTGCTCCATTGTCTTTCTCTTGAGGTGTGCCAGGAAAGGTCAGCAGGAACCTTTATACACCTGCTCAGCcttttgtaatattaaaataaaagagctGTTTTAAATAAGAGAGCAAGACAAATCCCAAGCTATACgtaagatgcatttatttttgtctaacttttagatttatttttgtatacttttaatttcttcccccccaccactctttttttgtctcctttgaaaatgttgtcCCCTCTGACAGAATAAACCAATGACATTACCCATTCAACTGCTTGTCTGGATCTGGATGTAAATATAACCATTTGTTCCTTCTGTCGTAGTGTGTcagtataaattaaatgtacatatagCTGGATGATTTCTG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140975 True 7167 lncRNA 0.36 1 21024706 21031872

Neighbor

gene id symbol gene type direction distance location
AMCG00006810 NA coding downstream 90491 20919534 ~ 20934215 (-)
AMCG00006808 NA coding downstream 180486 20767762 ~ 20844220 (-)
AMCG00006806 dennd6b coding downstream 316748 20689392 ~ 20707958 (-)
AMCG00006805 zgc:77650,arf5,LOC107559620,LOC107599973,LOC105888566,LOC107599983,LOC105912562 coding downstream 357761 20656253 ~ 20666945 (-)
AMCG00006800 NA coding downstream 387102 20627532 ~ 20637604 (-)
AMCG00006814 st8sia1 coding upstream 526 21032398 ~ 21048481 (-)
AMCG00006812 NA coding upstream 23068 21054940 ~ 21088079 (-)
AMCG00006816 NA coding upstream 75338 21107210 ~ 21129674 (-)
AMCG00006817 NA coding upstream 132100 21163972 ~ 21172849 (-)
AMCG00006819 wash1,LOC103045331,LOC107662897,LOC107735466 coding upstream 171179 21203051 ~ 21235769 (-)
G112563 NA non-coding downstream 6966 21017201 ~ 21017740 (-)
G112562 NA non-coding downstream 8658 21015373 ~ 21016048 (-)
G112557 NA non-coding downstream 27177 20997266 ~ 20997529 (-)
G112496 NA non-coding downstream 267920 20714083 ~ 20756786 (-)
G112410 NA non-coding downstream 945295 20078891 ~ 20079411 (-)
G112589 NA non-coding upstream 63469 21095341 ~ 21096308 (-)
G112705 NA non-coding upstream 778493 21810365 ~ 21853012 (-)
G112783 NA non-coding upstream 1022750 22054622 ~ 22058136 (-)
G112809 NA non-coding upstream 1225677 22257549 ~ 22257974 (-)
G112878 akr1d1,LOC106917221,LOC103465917,LOC103134490,LOC106953618 non-coding upstream 1637988 22669860 ~ 22670883 (-)
AMCG00006813 NA other downstream 60144 20854057 ~ 20964562 (-)
AMCG00006807 NA other downstream 371047 20647320 ~ 20653659 (-)
G112420 NA other downstream 788500 20235856 ~ 20236206 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 1388781 19633093 ~ 19635925 (-)
AMCG00006773 tmem243b,tmem243 other downstream 1392811 19623155 ~ 19631895 (-)
AMCG00006841 NA other upstream 1098623 22130495 ~ 22197664 (-)
AMCG00006854 NA other upstream 1921304 22953176 ~ 22958306 (-)
G113050 NA other upstream 2372303 23404175 ~ 23407207 (-)
AMCG00006866 NA other upstream 2536283 23568155 ~ 23571133 (-)
G113530 NA other upstream 5468143 26500015 ~ 26500681 (-)

Expression


Co-expression Network