G112783


Basic Information

Item Value
gene id G112783
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22054622 ~ 22058136 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU141258
ACAGAGCCCTCCCCTGAAGATTAGGACTCCCTGTTGGCCGTGCTGGAGCCAAAGTATGATTTACTAAGTGGTGACTAACAAGAGGTAGCAGCACCCTGGTGAGTGTTATGTTGTGGCTGTTCTGTAGCACCATTGGGTCCCAACGTGCTTTGACACCCCACCTAGGCTTTATTTTGATAGATGTTCCGTCATATAAATGAGCAGTTTGGCAGCAGTAGACCAGTTTCACCCTGTTAACCACCCAGACCTCGATGCCAGGCCCTGGGGGGAAGGTCTGCTGCCAAGGCCTGGTCAAGCTGCGTTCCTGTGTATCTCTTTCTTTAGTCATTTGTCTAATGAACGTCCCAGCAAATGAAACTGCACAGAAGcaggttttaaattaaactaattccTTACAGAAAGTTTTTATTTCCCTCCCTGGTTTTATCACAACTCTGCAAACTGGACATTTTACTTTCACTATTTATTCCCcttattatttgaatgttttttttaactatttaaaaactacagtttttgttgaagtgcttccTTGAAACGCCGCATCTTTTCATCTTCCTAACTTCTTCTGGTGCTAAAGTTGAGCTCCATGCGTCCCGTCATGTACAACATTTTGCCTTCTGTTGTTCATGAGTGGGTCCGGTCTTAATACAACATAGGAGTCCTACAACTGAAACACTCTTACACTTCTTTCATGTCCCATCATGAGGCAGTCTCTGTTAGATACTTCAGACAGCACAAGCCTTCAGATTGTCCACAGTATTATTTGCAGCACAATACGTGTCGTCAATATTCAGGAAGCAGAAACTGTAAAACTTCAGACTGGGCTGTTTTTCCTGGGAAGTGTAGGTTTAATGATGCCAATATGTGCCGTATGATGGAAAGATTGGCAACAGTACTTACCACATGTGGAGGTAAACCTGCATCTCTGCGGCAGTTTTGCATTCGTTTTGTGTGGTGTCGGTGTTATTTTCCTTGGATAACTTAACCCATGCAGCGTTTGTGCGTAGTTCCTTTCAATGaagggggatgggggtgggtGTCTGTGCAAGATGAGTGAGTTTCGAAGGAAGGAGCTCTgtaatctgaaatgtaaaaaaacaaacaaatctcagTGTTAAATCCTGAAATCCCACAAAATCAGTACCTGAATTCTACCATTTACTGCATGAACAATTTCTCTTTCAGCACATTAGGTAGAGTGTGAGAATGGTTGACTTTGTAACTGCGATGGCCAcagaatgttgttgtttttcattggatGGTTTTTCACTGGTTGTCCATATAAGGCCTTTTGGGTAAATAGACCTCTATGACCTCAAGTGAAAGAAATTCAGAGGCCTGCATTGTATTCAAAAGCCATGCTCTCTTCAAGACACACATCCTGAATGAAACATTTTTCAGGCATATCAAAGAGTCTACACCCAGAAGCCTTGCACTCCAGAGAAAAATGGTCAAAGAAACACCCAAAGGTATTGGAGTTTGTTCTTCTTGTCCATCTCAGAGAAATGGTTGGAAACAGGAGAGCACTGACTTCCGGACTGCATCAGAATTAAAGCTGACTTCTTGCAGATCTTTAACCAGAAAACACAGCCGatgagttgttttttaaaaggtgttttgtatttcagcggaaaacaaattttattttagtctACCTTGAGCAGGAGTTTTaccattgtttttaaatcatgttgCAGAGTTTGCCATTAAGTAAGAGAAAAAGCAGGTGTAGATTATCGACAGTAGGATTTGGAGTAAAGCATTTTAGTTGGGGAACCCGTAGTATGAATAGATCAATTGAAAATGACCAGACAGAAAAATGGACAGCTATCAGTATTATAGAAGGACTAGTACAGTGACCTTGAAATCTGGACTTTAAGGGCCAAAACACTTCTGCTTCATAATCATATTCAACCTGAGcccttaattagttaattgaagtaatttattCACCTGTagagacctataaaacctgttggTCCTCGAGGACTAGATTTCAGAATTCACTAAACTCAGTTTGATGTTTCTTCTCCCAGTTCCTTGTGTGTCTCTATTTCTCTCCTTCAAGTGCCCATTTTCCTCTCAAATGGTTGTCTACAGTGCTACAGTAAGAAGATGGGTTTTGATAGCTTCTAGGCTTGCCTTCCAAAGCTCGCCTTATTTTGAAGCCTCTTAACTGTGAGTCAGCATCTTCAGGTAATATTTGCAAAGAACAGTCATATAACCCATGTGTTAGTTCAATGCTGCATCAGATAGGACTGTACAGTGAAGACAGCAGACAAGGTTGTGAATGCTTTGGGCTTTTCAAATTGATGTCTAAACTAGGCAGCAATACTAGGTTTTCTGTCAGGatagctttttaaaacaaacaaattgagtTTACTAAAACTGCTgcaccaaaataaatgtattttgtttgtgttggttCTCTTATGTTTTCATGAACTGCTCAGTGATAATCTGAACCATTTTAAATGGCCCTGAAAGATCAGCTAATTCTGGGAGCTTGTTTCATGTTCCTTTATCCATCGCTCCAGTGTGTGAACTACAATTATTGTTaaactgaaatcaaatcagTTGGACGCAGGGGATCTCAAATGTGTGATTGTTCTGGAGACACAGGGCAAAGTTCTCCCTTAAAGGTCTGACCAAAGTAAACGATCTGTCACCTGAGTTGGCTCATTTCACTGACTTTTCCTCATCTCTGTGGGAATGTTTTGAATCTAATAAAGTTTTGTAGATGTTGAACAGTTgatagtatttaaaataaaaactaaaaagaaacaaaaacatgacttaAAATCCCATTTGTTGATGACGACATCAGTAACTGATTCATAATGTTAGTTTTCAATGTGGTGTGGCATCGCAGAGGTTTTTGGTCATTTCTAAAGCTGTGAAGGGAATTGGATTTTTCAGCAGAACTGGGTGGCATAATGGTAGCATCATTGAACACAAGCGTGACAAAAGgtctgaaggagaaaaaaaacgcTTAAGCTTTAAAGACACAATTAGCTATCTACCATGCATTTGGTACAAATCCTTAGCCCAGTATGTGCCTTATAATTTTACCACACCTGTGCAAGTCTTTTCAGATGGTTTGCCATTCGTTTTCCCCTACAATTAATGAAACACACCTGAAGGTTGACTGAAAATGTTTAGATACTAATTTGTTCTAATAGTAGTTGGTAAATCTAATGTGTCAGTACTGTTATTCACAACTGTTCAGCACACGGCAGTCATTCTACCACCTAACAGAtcctttgtttctttatattgtttttttttcttgtatgtttgtaaaattgacttgtttgtatgtttgtttttgtggaggACAAAAAAAAGGTTGGCAGGTCCAACTCATGGGTGGTTTAACAAACTGCATGTTTTATGACTATTAGGTTTTGATTATTTAcaatgtgtgttgttgtgcatgtcattaataaatactaaaaacattaaaaacaataatgaaaaccaaGCTCGGAGGTGAGTCATGTAGCAATTGA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141258 True 3515 lncRNA 0.39 1 22054622 22058136

Neighbor

gene id symbol gene type direction distance location
AMCG00006837 NA coding downstream 5444 22019892 ~ 22049178 (-)
AMCG00006832 NA coding downstream 177372 21866887 ~ 21877250 (-)
AMCG00006826 LOC100700740,LOC101481124,LOC102199940 coding downstream 460901 21559785 ~ 21593721 (-)
AMCG00006821 NA coding downstream 619435 21414320 ~ 21435187 (-)
AMCG00006819 wash1,LOC103045331,LOC107662897,LOC107735466 coding downstream 818853 21203051 ~ 21235769 (-)
AMCG00006838 NA coding upstream 108 22058244 ~ 22128302 (-)
AMCG00006839 NA coding upstream 141830 22199966 ~ 22202511 (-)
AMCG00006840 LOC105913426,LOC108429453 coding upstream 149527 22207663 ~ 22230259 (-)
AMCG00006845 NA coding upstream 476265 22534401 ~ 22543403 (-)
AMCG00006848 NA coding upstream 529524 22587660 ~ 22589738 (-)
G112705 NA non-coding downstream 201610 21810365 ~ 21853012 (-)
G112589 NA non-coding downstream 958314 21095341 ~ 21096308 (-)
G112568 NA non-coding downstream 1022750 21024706 ~ 21031872 (-)
G112563 NA non-coding downstream 1036882 21017201 ~ 21017740 (-)
G112562 NA non-coding downstream 1038574 21015373 ~ 21016048 (-)
G112809 NA non-coding upstream 199413 22257549 ~ 22257974 (-)
G112878 akr1d1,LOC106917221,LOC103465917,LOC103134490,LOC106953618 non-coding upstream 611724 22669860 ~ 22670883 (-)
G112903 NA non-coding upstream 708137 22766273 ~ 22772685 (-)
G112953 NA non-coding upstream 883323 22941459 ~ 22941670 (-)
G112979 NA non-coding upstream 1095732 23153868 ~ 23154903 (-)
AMCG00006813 NA other downstream 1090060 20854057 ~ 20964562 (-)
AMCG00006807 NA other downstream 1400963 20647320 ~ 20653659 (-)
G112420 NA other downstream 1818416 20235856 ~ 20236206 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 2418697 19633093 ~ 19635925 (-)
AMCG00006773 tmem243b,tmem243 other downstream 2422727 19623155 ~ 19631895 (-)
AMCG00006841 NA other upstream 72359 22130495 ~ 22197664 (-)
AMCG00006854 NA other upstream 895040 22953176 ~ 22958306 (-)
G113050 NA other upstream 1346039 23404175 ~ 23407207 (-)
AMCG00006866 NA other upstream 1510019 23568155 ~ 23571133 (-)
G113530 NA other upstream 4441879 26500015 ~ 26500681 (-)

Expression


Co-expression Network