G112802


Basic Information

Item Value
gene id G112802
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22257550 ~ 22258386 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU141281
CTTCTctttattatgcatttcttttgtGCAAACATACAAGTTCACAAAAAAGCAATTCTAAAAGATGACCAACACTGTTACCAGGACAACATAATTGTCTGGCCATAAGCTGAACTCTCTTGCAAAGAGGACAAAATTACCAGCCTATTATTCACATCTCTCTACTTACTGGCTACTGGGATTCCAGAAATTAGATCATTCAAACTCAGatattgaaagaaaagaaaagccaccAACCTCAGGGATGTTTCTGGTTTCGAGtgcactgtattaaaaaaaagccaGGAGTAACTCCCTcatattttggtttctttggGCTCCAGCTGAAGGACTTGAGGACCCCTGCGACTTGTTTCTAGCGTTGTATTGCTGCCCTTCAGGGAAGGCAGTAGGTTGTATAGTTATCTGCTGATGGGGCAAAATCACTACCCTGAAACCACACAACCTACTACCTCACCCTGTGCGAACACCAGCGAGTGCAGTCTCAAAGGCCCGTGAAAGTTACCCTACACGAGGCAGATTCCAAATGACACAGGGTGAACAGatgaaacattttctgtgtctgtttgtcctTTCCAAGAAAACTGGTCCAGAATCCCCCTGTTTCTTCAAAGAGATTGTGTATCTTTTCTGCAAGGATGTTACATTcaccagaaaaaaatgaagcaaGCAAAGCCAACAAtaccaaagaaaaatacaaataacataagCATACTCCTTGTCCCAACCTCCCCCTTCTCCACACTCCCGTCACCCTTGAACCCAATCAACACTTTGTGCAGTTTAAATCGACATAATGAAAATACACTCAGAAGTCTGTATGGTGAGATCTCCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141281 True 837 lncRNA 0.42 1 22257550 22258386

Neighbor

gene id symbol gene type direction distance location
AMCG00006835 NA coding upstream 243719 22004352 ~ 22013831 (+)
AMCG00006834 NA coding upstream 257824 21996225 ~ 21999726 (+)
AMCG00006836 LOC108264267,LOC107559327,LOC108414616 coding upstream 263222 21937375 ~ 21994328 (+)
AMCG00006831 LOC100694777,LOC104940279,LOC101482493,LOC106573176 coding upstream 389314 21855901 ~ 21868236 (+)
AMCG00006830 LOC105018129,LOC106573177,LOC106561385,LOC107587031,LOC107738414 coding upstream 404533 21835875 ~ 21853017 (+)
AMCG00006843 NA coding downstream 97194 22355580 ~ 22399845 (+)
AMCG00006842 LOC105018463,LOC106560992,LOC106584495,LOC107701192,LOC103380318,LOC105913395,LOC101155025,LOC105938539 coding downstream 141708 22400094 ~ 22447422 (+)
AMCG00006844 akr1d1,LOC108425343,LOC105020260,LOC108240983,LOC102198112 coding downstream 394478 22652864 ~ 22672256 (+)
AMCG00006849 kdm5a coding downstream 430798 22689184 ~ 22714844 (+)
AMCG00006850 NA coding downstream 496302 22754688 ~ 22772629 (+)
G112762 NA non-coding upstream 45758 22137485 ~ 22211792 (+)
G112758 NA non-coding upstream 189127 22068221 ~ 22068423 (+)
G112757 NA non-coding upstream 191746 22065595 ~ 22065804 (+)
G112756 LOC108412581 non-coding upstream 193515 22063704 ~ 22064035 (+)
G112755 NA non-coding upstream 197945 22059372 ~ 22059605 (+)
G112807 NA non-coding downstream 36302 22294688 ~ 22311460 (+)
G112832 NA non-coding downstream 197376 22455762 ~ 22455964 (+)
G112868 NA non-coding downstream 424574 22682960 ~ 22683187 (+)
G112938 NA non-coding downstream 605599 22863985 ~ 22864508 (+)
G112940 NA non-coding downstream 619003 22877389 ~ 22881356 (+)
AMCG00006829 NA other upstream 635042 21617632 ~ 21622508 (+)
AMCG00006820 NA other upstream 952672 21265253 ~ 21304878 (+)
G112600 NA other upstream 1054349 21142865 ~ 21203201 (+)
G112567 NA other upstream 1208512 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 1312573 20937497 ~ 20944977 (+)
AMCG00006865 hipk2 other downstream 1250763 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 1773703 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 2046310 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 2250617 24509003 ~ 24587119 (+)
G113369 LOC108442871 other downstream 3359681 25618067 ~ 25618445 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023777 CR354430.1 non-coding NC_007136.7 CM002909.2 2192682 ~ 2192775 (+)
grasscarp (Ctenopharyngodon idella) G110723 NA non-coding CI01000020 null 754453 ~ 788626 (+)
grasscarp (Ctenopharyngodon idella) G215653 NA non-coding CI01000050 null 5909722 ~ 5909955 (+)
eurasian perch (Perca fluviatilis) LOC120563856 NA non-coding NC_053119.1 CM020916.1 23198572 ~ 23224641 (-)