G112954


Basic Information

Item Value
gene id G112954
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22953180 ~ 22956200 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU141481
AAAGCTGtagcaatgcatttatttaaacatgtatttccaatatatttttatttcttcagaaaTATTTACCTACAAAAATATTTGCATGGTCCTATAATGTGTAGTGCATTAGATTTTCATGCTTGATAAAATATTTCAACCTCCCTAAAAATGTCAGTACATATGTCCTTAACTTTTAGCATACTAGAAATATTCAGAAAGAAAGTTTTTAACTATgccagttttaaaaacaatgacaatttaCAATTAATATCTCCCTTTTCTCAGGTTTCATAAGTTCATAAcggacaaataataataaaaaaaggatttagGGTAACATctaaacagttaaataaatcactgaatcATCTTTGGCAATACACATGCTTATCTGGTgatattaagaaacaaatgtgctacatacaatatatttaaaatgtaacaaaaatttGAGCAAAACATACCAACACAAAATAGTTGTATgccataaaatatataatacgaGAAAATATCTTGCAATAAGATATTGTATCCCAAGCTTTTCACTTGGGATACAACAGATAACTGACATATTTCCTCCACAAAAAGTaatttttgaattaaattaaaaacaaaatactacgCTATGGCATAGACCTTTTATATTCATTATGACAAGCttgatttatttgtcagtgATTGAGAAATACATTACTTGTAAGACTCACTctcacaaaatatttattctgaaagGTCACGATAACCTCATGTGGGAATTTCAGTTTATGTAAACAATTAAGATGTATTTTTGAGGCTTAATGAAGATGAGATGGAATTAAATACAGAGtgtgtaaatacacaaatattactAAATGTATCCTTTTGTTATGAAGCGATAATATGAATGCCAGATTGAtacaataacatttacaaaatattttgtaaaaatcttCCTTAACATAtcatagtgttttaaaaataaaaccattcttGGTTAGTCTTTTTTCTACTCACACTGATTACaactaaaatgcaataaataggCCCTTGCAAAGCAAATAGCaaccattaaacaaataaagcaattaaaacaaacttaacCTCCACATATGAGTCACACAATCTTGAGTTATGTTGGACATTTTGTTCCTCAATAAATTTTGCTTTCTGTCATAACACtaagttttaaaagtaataagTAATTTGAAAGATGCAGAAActtaaagataattaatttggtattttgttttcagtcaagTAGGACAGGAAATGTTTTATAAGTAATTCTGCTGGTCCAGTAACGTTTTCACATTTGATTAAACTATTTTGTCAAGGGTATGTAGATAAGCTGGTGAAAATCTTCATTCTAAATACTTAtggttttattaaatgaaaagtaaaactTTCTTGAAGCTTTGcttatttcattataaaatagtTCTCTCTgttgagctgtttttttttggatttCTATAACTATATTTAAGACATTAAATCGAGTGCAAAACTAAAGCTCATTTTAAGTATTCCCCTGTAAATATGAATCTTCAGACAACCATTAAGACTTTATAgtcttaataatatatattaaccaTATACTTATATAGTCTTAATAACGTATtggatacatacattttatttcagttgggCTTATTTTAGGTGACTCGGGAAAGCAGAAAAATCTATTTCAGCACTTCTCTATTTCTTCTGGTTTACATGTGTCCAGCTGCGTGTTTTGGGATTGGAAGTTGCCTCGGTGAAAATATTGCATTatgctaaataataatggaatttTATTCATAAAGTATTTACTTTGGACTTTCAACCACAGTTGTCGTATTATTTTCCGCATCATTCTTCCTCACTTGTGTTTGCATAGCTACCACATTTTCTGTGTCTCTGGTAGTTGTGTATGTACTCCAGTAAGTAACAATTGTCATTTTCTCTTGAatcgaatatatatatatatatatatatatatatgttaatttgaaaaatagGTACATACAATAATTTTCTGTTCAAATGGATATtgtgtgaatttaaatattagataggctactttaaaatgaaaacgttTTATAGAATATACAGAGTAAACCAATATCAGGTAATGAAGTAGAAAAAACAGCTGTGCAATTCTAAAGCATACCTTgcgagaagaaataaaaaaatattaaacaagtgCATATTCTCATGATAAACCTGAATCTGACTTACAAGACAGTAACAGGTAGCAGGTTGTCAAAGGTAAAATCAAGTTACAATACAGCCAATAACACAAATGCAAAGTTCCAGAGCTAcagatgtttttgtattcaattttttGTCCAATCAGTTATCAACTAAATTGCATCTTAATATGTGGAAAACTTCAGGTCTTTCAACATTGGACAAGAAAACAATCCATTTAGTAACAATTCGTTGAATGATGTATACATTCCTACGTACTgacactttaaatacattaaactgttCAACTGTTTTATCTGTAATCCCTTATAAAACGAAATTTTCCCCccattgtgtttttcctttggGGGCGTGGGAGGCTATTTCTACGATCTTTAAAAGTCGGTCGGTTTGCAAGTGTAtatcagttaaataaataaatacaaaataaataaacacttcgAGAGATTGCTTTAGGATTCAACTGGGATGGACCTGCAGGATTTGGGGGAGTTGTCGTAGTCCCTCCAGGTCCCGATGCTGCAGTCGGGACTCCGGTTGTGGATCCTGGTTAGGAGCGTGTTCCTGCGCAGGCTGCTGTCCGAGTCCTGCTTCTTAAACCTCGGCCTCATCTGCCGGCTGCAGGGGAAGCAGTTGGCAAAATCCTGCAAAAGGTGCCCGCTGAAGATCATGTAAATCCACGGGTTGCAGCAGCTGTTCAGGCTGGCGAGCAGCGCCGTCAGCGTCACGGCCGTGTTCTCGGACTCTGGGGGACAGAAAGCCGAGAGACAAGACTTCAGCTGCGCCGCGTCTCTGCGCCAGATGAACCGGGTTTGCGCAACCGCCCTGCGCAGACCATTTCTCAACAGCGCTTGGCAACAACACTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141481 True 3021 lncRNA 0.33 1 22953180 22956200

Neighbor

gene id symbol gene type direction distance location
AMCG00006852 mon2 coding upstream 91143 22826983 ~ 22862037 (+)
AMCG00006853 NA coding upstream 135817 22809303 ~ 22817363 (+)
AMCG00006851 usp15 coding upstream 147574 22774720 ~ 22805606 (+)
AMCG00006850 NA coding upstream 180551 22754688 ~ 22772629 (+)
AMCG00006849 kdm5a coding upstream 238336 22689184 ~ 22714844 (+)
AMCG00006856 NA coding downstream 192806 23149006 ~ 23157435 (+)
AMCG00006857 NA coding downstream 250993 23207193 ~ 23282722 (+)
AMCG00006861 NA coding downstream 328538 23284738 ~ 23289336 (+)
AMCG00006860 NA coding downstream 347255 23303455 ~ 23320773 (+)
AMCG00006859 NA coding downstream 378886 23335086 ~ 23343567 (+)
G112940 NA non-coding upstream 71824 22877389 ~ 22881356 (+)
G112938 NA non-coding upstream 88672 22863985 ~ 22864508 (+)
G112868 NA non-coding upstream 269993 22682960 ~ 22683187 (+)
G112832 NA non-coding upstream 497216 22455762 ~ 22455964 (+)
G112807 NA non-coding upstream 641720 22294688 ~ 22311460 (+)
G112955 LOC105913372 non-coding downstream 1048 22957248 ~ 22958605 (+)
G113075 NA non-coding downstream 624315 23580515 ~ 23597219 (+)
G113090 NA non-coding downstream 765182 23721382 ~ 23721632 (+)
G113159 NA non-coding downstream 1120553 24076753 ~ 24288917 (+)
G113224 NA non-coding downstream 1414518 24370718 ~ 24372835 (+)
AMCG00006829 NA other upstream 1330672 21617632 ~ 21622508 (+)
AMCG00006820 NA other upstream 1648302 21265253 ~ 21304878 (+)
G112600 NA other upstream 1749979 21142865 ~ 21203201 (+)
G112567 NA other upstream 1904142 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 2008203 20937497 ~ 20944977 (+)
AMCG00006865 hipk2 other downstream 552949 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 1075889 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 1348496 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 1552803 24509003 ~ 24587119 (+)
G113369 LOC108442871 other downstream 2661867 25618067 ~ 25618445 (+)

Expression


Co-expression Network