G112979


Basic Information

Item Value
gene id G112979
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23153868 ~ 23154903 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU141507
taatttaaatggcTGAGACCCTGTGCAGTACTTATCACAGATCTTTCTGACACTGTGGGACTACAGGAGAGGAAGACTGAGCCAGGCAGCTGGACACCAGGGGGAAAGACATGAACTATTCAAACTGTAGAAGAGTAACAGGGGGGGGCAGCAAGAGGAGATATAGGGagagacaggagacaggagGTAGGAAGGGACAGCATGGTGAAACGAGCTGTGTCTCAGGACTAGGTATTTAGCATTTccttgaaactccacgaggtgagatcttgcatggagccccagaccgagggagactgacagttattttgtgtttcttccatttgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgataTCCTTGGACacctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtctcagctcgttacctgtataaaagacacctgggagccagaaatcttgctgattgataggggatcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttgtggatgtttttgttgttattctgtctctcactgttaaaatacatctaccattaaaatcatagactgatcatttctttgtcagggggcaaacatacaaaatcagcaggggatcaaatactttttttccctcactgtatatatatatatatatatatatacactcacctaaaggattattaggaacaccatactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttgactattattgataggatagcatcttgcagttgatggagatttgtgggatgcacatcca

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141507 True 977 lncRNA 0.42 2 23153868 23154903

Neighbor

gene id symbol gene type direction distance location
AMCG00006855 NA coding downstream 225463 22881514 ~ 22928405 (-)
AMCG00006847 NA coding downstream 502351 22626401 ~ 22651517 (-)
AMCG00006846 NA coding downstream 546485 22592099 ~ 22607383 (-)
AMCG00006848 NA coding downstream 564130 22587660 ~ 22589738 (-)
AMCG00006845 NA coding downstream 610465 22534401 ~ 22543403 (-)
AMCG00006862 si:ch211-125a15.1,LOC107743608,LOC107726025,LOC107580661,LOC107592225,LOC107658829 coding upstream 132353 23287256 ~ 23302174 (-)
AMCG00006864 NA coding upstream 220464 23375367 ~ 23376805 (-)
AMCG00006873 LOC108429457,LOC107745572,LOC107549582,LOC105913374,LOC107669036 coding upstream 476136 23631039 ~ 23752269 (-)
AMCG00006876 LOC108429384,LOC108274557,LOC106584451 coding upstream 694742 23849645 ~ 23868247 (-)
AMCG00006877 NA coding upstream 744256 23899159 ~ 23899569 (-)
G112953 NA non-coding downstream 212198 22941459 ~ 22941670 (-)
G112903 NA non-coding downstream 381183 22766273 ~ 22772685 (-)
G112878 akr1d1,LOC106917221,LOC103465917,LOC103134490,LOC106953618 non-coding downstream 482985 22669860 ~ 22670883 (-)
G112809 NA non-coding downstream 895894 22257549 ~ 22257974 (-)
G112783 NA non-coding downstream 1095732 22054622 ~ 22058136 (-)
G113013 NA non-coding upstream 166174 23321077 ~ 23321771 (-)
G113014 NA non-coding upstream 168030 23322933 ~ 23323151 (-)
G113066 hipk2 non-coding upstream 392894 23547797 ~ 23554739 (-)
G113209 NA non-coding upstream 1160829 24315732 ~ 24321862 (-)
G113212 NA non-coding upstream 1176184 24331087 ~ 24335914 (-)
AMCG00006854 NA other downstream 195562 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 956204 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 2189306 20854057 ~ 20964562 (-)
AMCG00006807 NA other downstream 2500209 20647320 ~ 20653659 (-)
G112420 NA other downstream 2917662 20235856 ~ 20236206 (-)
G113050 NA other upstream 249272 23404175 ~ 23407207 (-)
AMCG00006866 NA other upstream 413252 23568155 ~ 23571133 (-)
G113530 NA other upstream 3345112 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 4247697 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 5112359 28267262 ~ 28292598 (-)

Expression


Co-expression Network